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hypothetical_protein_pmac_cds_91
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_91__YP_009480775__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009480775 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_91
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-87
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.72 | 46.0 | 4.60e-01 | 78.5% | 63.6% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.72 | 46.0 | 4.89e-01 | 76.9% | 76.4% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.64 | 46.0 | 4.19e-01 | 76.9% | 87.5% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.63 | 52.0 | 4.66e-01 | 90.8% | 92.3% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 43.0 | 3.66e-01 | 100.0% | 42.0% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.62 | 43.0 | 4.18e-01 | 73.8% | 90.5% |
| 3ckcA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 45.0 | 3.41e-01 | 83.1% | 29.9% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 4.59e-01 | 92.3% | 90.2% |
| 4gxbA02 | 1.20.80.60 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.60 | 43.0 | 4.42e-01 | 76.9% | 100.0% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.60 | 37.0 | 3.82e-01 | 100.0% | 66.7% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.58 | 46.0 | 4.16e-01 | 86.2% | 97.8% |
| 3kezA03 | 1.25.40.900 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 49.0 | 4.17e-01 | 100.0% | 59.0% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 3.98e-01 | 81.5% | 75.9% |
| 3zdrA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.58 | 49.0 | 3.52e-01 | 100.0% | 90.0% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.13e-01 | 90.8% | 95.6% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 39.0 | 3.92e-01 | 98.5% | 71.6% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.55 | 38.0 | 3.05e-01 | 100.0% | 36.6% |
| 4f03B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 39.0 | 3.05e-01 | 76.9% | 84.1% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 39.0 | 3.78e-01 | 76.9% | 93.1% |
| 4ce7B00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 45.0 | 2.92e-01 | 100.0% | 70.4% |
| 4y0bA00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.53 | 45.0 | 3.58e-01 | 98.5% | 71.4% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.51 | 36.0 | 3.48e-01 | 76.9% | 88.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012534 | 6049.1.1.1 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like › NitrOD5 | 0.72 | 54.0 | 4.85e-01 | 80.0% | 94.4% |
| 4567937 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 49.0 | 5.44e-01 | 83.1% | 100.0% |
| 5001143 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.66 | 50.0 | 3.98e-01 | 84.6% | 80.7% |
| 3786815 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 48.0 | 4.46e-01 | 86.2% | 64.7% |
| 4929492 | 601.1.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 | 0.61 | 47.0 | 3.76e-01 | 86.2% | 76.4% |
| 4614 | 109.4.1.225 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GUN4_N | 0.59 | 38.0 | 3.53e-01 | 92.3% | 51.2% |
| 3420880 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 47.0 | 2.78e-01 | 86.2% | 14.5% |
| 3339530 | 101.1.22.1 ↗ | alpha arrays › HTH › HTH › double HTH › HTH_RNase_II | 0.58 | 50.0 | 4.24e-01 | 100.0% | 57.3% |
| 3299054 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 45.0 | 2.83e-01 | 86.2% | 17.9% |
| 3445234 | 2.9.1.0 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like | 0.57 | 49.0 | 3.10e-01 | 100.0% | 17.1% |
| 3306744 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 44.0 | 2.63e-01 | 86.2% | 13.0% |
| 3541293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.09e-01 | 92.3% | 94.4% |
| 4392474 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.55 | 48.0 | 3.93e-01 | 100.0% | 70.4% |
| 3182988 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.55 | 40.0 | 4.02e-01 | 83.1% | 80.0% |
| 4011005 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.54 | 39.0 | 3.99e-01 | 83.1% | 81.2% |
| 3541829 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 41.0 | 3.55e-01 | 86.2% | 84.5% |
| 4507159 | 109.4.1.252 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HSM3_C,HSM3_N | 0.52 | 38.0 | 2.35e-01 | 80.0% | 15.6% |
| 4227860 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.52 | 39.0 | 3.86e-01 | 100.0% | 77.1% |
| 3411866 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.52 | 45.0 | 3.64e-01 | 96.9% | 76.8% |
| 4123065 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.51 | 44.0 | 3.49e-01 | 96.9% | 77.0% |
| 4929546 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.51 | 37.0 | 3.68e-01 | 80.0% | 95.7% |
| 3272819 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.51 | 43.0 | 3.72e-01 | 100.0% | 81.8% |
| 5012836 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.51 | 44.0 | 2.97e-01 | 100.0% | 73.1% |
| 3251018 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.50 | 37.0 | 3.13e-01 | 80.0% | 83.3% |
D2
medium
residues 129-225
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4modA00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 25.0 | 2.85e-01 | 89.7% | 40.8% |
| 3zrhA01 | 1.25.40.560 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 35.0 | 3.54e-01 | 70.1% | 69.8% |
| 4a91A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 37.0 | 3.31e-01 | 78.4% | 86.8% |
| 3ukmA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 45.0 | 3.36e-01 | 99.0% | 89.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3298752 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.74 | 35.0 | 3.34e-01 | 100.0% | 37.4% |
| 3170098 | 109.4.1.1362 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C | 0.67 | 45.0 | 3.25e-01 | 70.1% | 35.9% |
| 3631996 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.65 | 47.0 | 4.83e-01 | 75.3% | 93.3% |
| 3191430 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.65 | 46.0 | 4.95e-01 | 81.4% | 85.5% |
| 3299128 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.64 | 49.0 | 4.85e-01 | 80.4% | 94.0% |
| 3694013 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.63 | 45.0 | 4.51e-01 | 75.3% | 77.0% |
| 3244680 | 145.1.1.2 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A | 0.62 | 44.0 | 4.73e-01 | 90.7% | 90.0% |
| 3473623 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.62 | 48.0 | 5.07e-01 | 86.6% | 95.3% |
| 3260331 | 145.1.1.2 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A | 0.62 | 44.0 | 4.53e-01 | 90.7% | 76.8% |
| 3187719 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.62 | 43.0 | 4.72e-01 | 73.2% | 92.0% |
| 3464778 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.62 | 47.0 | 4.98e-01 | 87.6% | 92.9% |
| 3204462 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.61 | 50.0 | 4.56e-01 | 87.6% | 86.4% |
| 4017125 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 33.0 | 2.39e-01 | 87.6% | 20.8% |
| 3647728 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.57 | 30.0 | 2.90e-01 | 81.4% | 41.7% |
| 5005708 | 3755.3.1.127 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N | 0.57 | 34.0 | 2.70e-01 | 90.7% | 32.2% |
| 3998040 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.53 | 36.0 | 2.99e-01 | 93.8% | 38.0% |
| 3956453 | 601.3.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Alpha-E | 0.53 | 39.0 | 3.46e-01 | 78.4% | 90.3% |
| 3625755 | 5054.1.1.10 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › UNC-50 | 0.52 | 42.0 | 3.33e-01 | 89.7% | 97.7% |
D3
medium
residues 226-318
D4
medium
residues 319-465