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hypothetical_protein_pmac_cds_926
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_926__YP_009481610__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481610 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_926
- Kingdom:
- euk
Quality
59.4
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 244-300_469-483_520-563
D2
medium
residues 301-332_438-468
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.68 | 49.0 | 4.12e-01 | 82.5% | 45.4% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 49.0 | 3.47e-01 | 81.0% | 60.4% |
| 2bzbA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.65 | 41.0 | 4.15e-01 | 74.6% | 64.5% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.65 | 43.0 | 3.42e-01 | 96.8% | 32.4% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.64 | 52.0 | 4.67e-01 | 93.7% | 88.2% |
| 2kw7A00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.61 | 50.0 | 3.80e-01 | 92.1% | 70.7% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 51.0 | 3.32e-01 | 92.1% | 25.8% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.60 | 39.0 | 3.53e-01 | 73.0% | 45.6% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.59 | 47.0 | 3.71e-01 | 90.5% | 70.6% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 46.0 | 3.68e-01 | 87.3% | 78.7% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.56 | 42.0 | 2.88e-01 | 84.1% | 60.9% |
| 2fh0A00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.56 | 38.0 | 3.55e-01 | 71.4% | 55.6% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.56 | 42.0 | 3.53e-01 | 81.0% | 77.6% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.55 | 40.0 | 3.99e-01 | 82.5% | 73.1% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 45.0 | 4.21e-01 | 93.7% | 86.4% |
| 1j0mA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.52 | 39.0 | 2.53e-01 | 85.7% | 94.7% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 40.0 | 3.65e-01 | 85.7% | 71.9% |
| 4a25B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 39.0 | 2.93e-01 | 81.0% | 73.3% |
| 1f6fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 43.0 | 3.13e-01 | 96.8% | 59.6% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.50 | 40.0 | 3.51e-01 | 84.1% | 62.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3535287 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.72 | 52.0 | 4.95e-01 | 98.4% | 64.0% |
| 4971109 | 832.1.1.1 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_1 | 0.68 | 42.0 | 3.26e-01 | 77.8% | 28.9% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.65 | 45.0 | 4.43e-01 | 79.4% | 67.6% |
| 4964216 | 5063.1.1.24 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PF26047 | 0.63 | 46.0 | 4.57e-01 | 90.5% | 75.4% |
| 3283312 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.60 | 44.0 | 3.63e-01 | 81.0% | 55.0% |
| 3979277 | 101.1.1.44 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ParB | 0.59 | 49.0 | 3.92e-01 | 90.5% | 50.4% |
| 4082216 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.59 | 41.0 | 4.35e-01 | 74.6% | 92.7% |
| 3727014 | 207.1.1.100 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8+LRR_14 | 0.58 | 47.0 | 3.11e-01 | 88.9% | 30.9% |
| 3395248 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.58 | 42.0 | 3.49e-01 | 77.8% | 76.5% |
| 3638160 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.58 | 48.0 | 3.19e-01 | 92.1% | 31.7% |
| 1003781 | 103.7.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind | 0.56 | 38.0 | 3.55e-01 | 71.4% | 55.6% |
| 4295116 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.56 | 45.0 | 4.34e-01 | 100.0% | 80.0% |
| 3350187 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.55 | 39.0 | 2.86e-01 | 79.4% | 31.0% |
| 4939372 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.54 | 39.0 | 3.76e-01 | 74.6% | 71.4% |
| 4175163 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.53 | 43.0 | 3.09e-01 | 98.4% | 60.4% |