←Back to structures
hypothetical_protein_pneo_cds_1003
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_1003__YP_009482613__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482613 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_1003
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-88
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.58 | 41.0 | 3.80e-01 | 80.0% | 56.4% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.58 | 42.0 | 4.09e-01 | 75.7% | 83.3% |
| 2xcjA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 34.0 | 3.22e-01 | 77.1% | 47.6% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.54 | 37.0 | 3.44e-01 | 75.7% | 53.2% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.23e-01 | 75.7% | 51.6% |
| 1xdpA01 | 1.20.58.310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain | 0.53 | 38.0 | 3.39e-01 | 77.1% | 73.3% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 40.0 | 3.58e-01 | 85.7% | 86.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725291 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.63 | 51.0 | 4.63e-01 | 88.6% | 71.6% |
| 3193482 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.61 | 47.0 | 4.24e-01 | 82.9% | 90.5% |
| 3725174 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.60 | 48.0 | 4.60e-01 | 92.9% | 76.2% |
| 3694013 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.60 | 48.0 | 4.25e-01 | 87.1% | 80.0% |
| 3695186 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.59 | 49.0 | 4.71e-01 | 92.9% | 88.7% |
| 3191984 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.58 | 49.0 | 4.41e-01 | 94.3% | 70.0% |
| 3399970 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.56 | 48.0 | 3.41e-01 | 100.0% | 37.9% |
| 3881666 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.56 | 39.0 | 3.90e-01 | 87.1% | 72.9% |
| 4031434 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 40.0 | 3.79e-01 | 77.1% | 74.1% |
| 4944911 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.55 | 40.0 | 2.51e-01 | 77.1% | 58.5% |
| 3664299 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.54 | 37.0 | 3.40e-01 | 72.9% | 94.7% |
| 3686935 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 44.0 | 4.07e-01 | 100.0% | 73.0% |
| 3230101 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.52 | 45.0 | 3.44e-01 | 98.6% | 71.8% |
| 3595717 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.51 | 36.0 | 3.70e-01 | 82.9% | 81.5% |
| 3437971 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.51 | 43.0 | 4.06e-01 | 100.0% | 78.9% |
| 3189161 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 41.0 | 2.57e-01 | 90.0% | 52.5% |
| 3527636 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 37.0 | 3.53e-01 | 81.4% | 66.3% |
| 3311308 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 43.0 | 2.72e-01 | 100.0% | 18.3% |