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hypothetical_protein_pneo_cds_1010

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_1010__YP_009482620__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482620 ↗
Protein ID:
hypothetical_protein_pneo_cds_1010
Kingdom:
euk

Quality

64.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-131_145-159
PDB
D2 medium residues 160-303
PDB
Domain cluster: rep: hypothetical_protein_ml_242__YP_009165208__Mollivirus_sibericum_Viruses.__X__D157-284
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 28.0 3.43e-01 86.8% 58.5%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 28.0 3.53e-01 87.5% 62.4%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 35.0 4.00e-01 84.7% 69.2%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 25.0 3.26e-01 83.3% 61.7%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 27.0 3.53e-01 85.4% 69.5%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 26.0 3.21e-01 88.9% 59.3%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 29.0 3.76e-01 87.5% 80.3%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 29.0 3.61e-01 91.7% 70.8%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 25.0 3.01e-01 83.3% 52.5%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.61 31.0 3.45e-01 86.1% 58.1%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 25.0 3.18e-01 84.7% 62.0%
6n3dA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 24.0 3.10e-01 81.2% 60.5%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 26.0 3.21e-01 83.3% 62.1%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 28.0 3.45e-01 89.6% 69.8%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 25.0 3.17e-01 85.4% 63.9%
1u7lA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 27.0 3.40e-01 86.1% 70.0%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 27.0 3.21e-01 88.2% 61.8%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 24.0 3.15e-01 89.6% 70.7%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 27.0 3.03e-01 81.9% 59.8%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 22.0 2.97e-01 87.5% 71.0%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 23.0 3.18e-01 86.1% 78.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 25.0 3.28e-01 88.9% 92.2%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 22.0 2.83e-01 83.3% 66.2%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 25.0 2.81e-01 87.5% 56.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988966 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.72 27.0 3.79e-01 83.3% 66.7%
3603586 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.72 26.0 3.74e-01 82.6% 68.6%
5016099 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 26.0 3.88e-01 82.6% 73.8%
3164917 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.71 27.0 3.58e-01 85.4% 62.5%
5051924 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.70 26.0 3.80e-01 81.9% 73.8%
3303164 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 27.0 3.85e-01 84.0% 75.4%
3833178 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 29.0 3.81e-01 87.5% 68.8%
3942499 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 26.0 3.65e-01 82.6% 68.6%
3974225 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.69 27.0 3.58e-01 86.1% 63.7%
3954005 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.69 29.0 4.27e-01 83.3% 91.7%
4940222 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 25.0 3.72e-01 82.6% 73.8%
3943515 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.68 27.0 3.54e-01 84.7% 63.7%
5037945 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.68 26.0 3.37e-01 84.7% 58.8%
4986600 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.68 26.0 2.84e-01 83.3% 40.8%
5039113 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 25.0 3.69e-01 82.6% 73.8%
5068395 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.67 25.0 3.64e-01 82.6% 73.8%
3426109 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 28.0 3.15e-01 84.0% 48.2%
4067121 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.66 26.0 3.34e-01 84.7% 60.0%
3384929 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 26.0 3.72e-01 86.8% 76.9%
5063981 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 27.0 3.66e-01 85.4% 73.3%
3438053 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 26.0 3.54e-01 83.3% 69.3%
4020643 304.8.1.1 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.65 27.0 3.27e-01 87.5% 55.8%
3683288 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.64 28.0 4.17e-01 84.0% 96.7%
4274665 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 27.0 3.12e-01 86.8% 51.5%
3284562 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.64 25.0 3.25e-01 84.7% 60.0%
5266 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.64 25.0 3.39e-01 82.6% 68.6%
3345154 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 25.0 3.27e-01 83.3% 62.8%
5032056 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 28.0 3.31e-01 87.5% 57.3%
3948358 11.1.1.791 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8393 0.63 26.0 3.15e-01 86.8% 55.0%
4946247 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.60 31.0 3.54e-01 90.3% 64.8%
4547137 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.60 25.0 3.18e-01 87.5% 62.4%
3232572 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 24.0 3.17e-01 81.9% 65.3%
3323407 304.126.1.2 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.59 28.0 3.20e-01 86.1% 59.0%
5029360 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.59 27.0 3.68e-01 84.7% 89.2%
4282418 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.57 21.0 2.90e-01 82.6% 62.9%
3759359 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.57 30.0 3.43e-01 84.0% 66.4%
4605207 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.57 30.0 3.35e-01 87.5% 61.7%
1807387 304.4.1.15 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP 0.56 27.0 3.21e-01 88.2% 61.8%
5034097 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 25.0 3.05e-01 81.9% 62.4%
5023213 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 22.0 3.00e-01 88.2% 68.6%
3840001 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.54 27.0 3.41e-01 90.3% 78.8%
5030786 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 24.0 2.99e-01 81.9% 67.5%
4612662 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.51 27.0 3.33e-01 91.0% 78.5%