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hypothetical_protein_pneo_cds_1055
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_1055__YP_009482665__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482665 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_1055
- Kingdom:
- euk
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-65
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cecB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.77 | 68.0 | 4.84e-01 | 100.0% | 39.9% |
| 3t8kA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.72 | 62.0 | 4.55e-01 | 100.0% | 48.4% |
| 3uxgA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 60.0 | 4.60e-01 | 100.0% | 47.2% |
| 2hraA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 49.0 | 4.44e-01 | 96.9% | 87.9% |
| 3ab3D00 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.53 | 43.0 | 3.38e-01 | 98.5% | 93.3% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.52 | 38.0 | 3.05e-01 | 83.1% | 57.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3665356 | 109.3.1.184 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, NPR1_like_C, Ank_2 | 0.80 | 70.0 | 5.44e-01 | 100.0% | 55.9% |
| None | — | 0.77 | 70.0 | 4.20e-01 | 100.0% | 19.5% | |
| 3819858 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.76 | 67.0 | 5.11e-01 | 100.0% | 51.6% |
| 3446444 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.76 | 66.0 | 4.28e-01 | 100.0% | 27.3% |
| 3376644 | 109.3.1.99 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2+Ank_5 | 0.74 | 64.0 | 5.02e-01 | 100.0% | 56.6% |
| 3806290 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.74 | 64.0 | 4.84e-01 | 100.0% | 51.2% |
| 3736928 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.73 | 63.0 | 5.16e-01 | 100.0% | 58.4% |
| 3983685 | 109.3.1.84 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Toxin_15 | 0.67 | 58.0 | 3.79e-01 | 100.0% | 54.5% |
| 5077470 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.64 | 46.0 | 3.91e-01 | 75.4% | 93.3% |
| 3921974 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 54.0 | 4.02e-01 | 100.0% | 64.0% |
| 4946543 | 2004.1.3.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR_N | 0.50 | 43.0 | 3.14e-01 | 100.0% | 35.4% |
D2
medium
residues 66-135
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xaxB02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.69 | 54.0 | 4.91e-01 | 87.1% | 75.8% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 3.80e-01 | 78.6% | 86.8% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 39.0 | 3.66e-01 | 71.4% | 95.6% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.57 | 46.0 | 3.64e-01 | 91.4% | 53.2% |
| 2eqxA01 | 1.25.40.420 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 46.0 | 4.34e-01 | 98.6% | 75.5% |
| 3m9vA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.56 | 43.0 | 3.64e-01 | 85.7% | 74.0% |
| 1tx9A00 | 1.10.1850.10 | Mainly Alpha › Orthogonal Bundle › Procapsid Of Bacteriophage Phix174, Chain 1 › Scaffold protein D | 0.53 | 42.0 | 3.43e-01 | 90.0% | 63.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3448905 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.62 | 53.0 | 3.84e-01 | 100.0% | 34.4% |
| 4455497 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.60 | 52.0 | 5.03e-01 | 98.6% | 97.5% |
| 4945271 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 50.0 | 3.54e-01 | 100.0% | 36.3% |
| 3446595 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 49.0 | 3.75e-01 | 100.0% | 55.7% |
| 3889216 | 509.1.1.3 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N | 0.58 | 42.0 | 4.19e-01 | 80.0% | 73.3% |
| 4888168 | 109.3.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 40.0 | 3.87e-01 | 85.7% | 65.8% |