←Back to structures
hypothetical_protein_pneo_cds_1063
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_1063__YP_009482673__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482673 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_1063
- Kingdom:
- euk
Quality
60.1
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-68
D2
high
residues 79-204_246-263
D3
medium
residues 278-380
Domain cluster:
rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.62 | 44.0 | 4.15e-01 | 73.8% | 100.0% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 36.0 | 3.26e-01 | 100.0% | 44.9% |
| 4uyaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 43.0 | 3.53e-01 | 80.6% | 85.3% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.54 | 42.0 | 3.86e-01 | 81.6% | 81.8% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 42.0 | 3.17e-01 | 86.4% | 80.9% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 37.0 | 3.33e-01 | 70.9% | 74.8% |
| 3x0uB01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.51 | 42.0 | 3.33e-01 | 93.2% | 90.5% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.51 | 36.0 | 3.45e-01 | 89.3% | 63.8% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.51 | 43.0 | 3.97e-01 | 97.1% | 87.2% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.51 | 37.0 | 3.32e-01 | 78.6% | 92.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 37.0 | 3.57e-01 | 77.7% | 91.7% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 37.0 | 3.78e-01 | 100.0% | 78.4% |
| 3qf3D00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 32.0 | 3.06e-01 | 100.0% | 52.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3618958 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.59 | 42.0 | 3.42e-01 | 74.8% | 89.0% |
| 5002024 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.55 | 48.0 | 4.04e-01 | 98.1% | 92.0% |
| 4963180 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.54 | 42.0 | 4.34e-01 | 82.5% | 94.7% |
| 4483871 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.53 | 47.0 | 4.19e-01 | 100.0% | 78.7% |
| 3638800 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.51 | 38.0 | 3.42e-01 | 78.6% | 86.7% |
D4
medium
residues 394-458
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 42.0 | 3.38e-01 | 89.2% | 77.1% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 32.0 | 3.09e-01 | 95.4% | 50.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3997361 | 592.1.1.5 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 | 0.58 | 40.0 | 3.78e-01 | 92.3% | 58.7% |
| 4941477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.31e-01 | 98.5% | 85.0% |
| 3219466 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 3.06e-01 | 98.5% | 36.4% |
| 5042781 | 101.1.2.599 ↗ | alpha arrays › HTH › HTH › winged helix domain › ELP3_N | 0.50 | 34.0 | 3.49e-01 | 96.9% | 73.8% |