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hypothetical_protein_pneo_cds_1076

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_1076__YP_009482686__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482686 ↗
Protein ID:
hypothetical_protein_pneo_cds_1076
Kingdom:
euk

Quality

74.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 267-331
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t8kA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 64.0 4.59e-01 96.9% 38.0%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 57.0 4.42e-01 98.5% 54.9%
4gzcA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 55.0 4.50e-01 98.5% 62.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.63 51.0 4.61e-01 96.9% 83.0%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 3.92e-01 92.3% 71.7%
1txdA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.60 50.0 3.51e-01 95.4% 58.0%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 51.0 3.02e-01 100.0% 12.1%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 46.0 3.77e-01 89.2% 77.6%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 45.0 3.68e-01 87.7% 78.8%
2g1pA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.56 41.0 3.64e-01 80.0% 60.0%
3lxuX06 1.25.40.710 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 3.20e-01 100.0% 68.6%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.55 43.0 3.47e-01 89.2% 52.9%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 45.0 3.66e-01 93.8% 80.0%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 3.33e-01 78.5% 71.1%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 4.31e-01 95.4% 89.7%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 31.0 2.73e-01 95.4% 41.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3454140 109.4.1.2580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ank, Ank_2, TPR_8 0.76 65.0 4.60e-01 96.9% 32.1%
3276119 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.76 65.0 4.27e-01 93.8% 24.5%
3500065 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.85e-01 96.9% 37.0%
60072 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 5.03e-01 100.0% 89.4%
3261751 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.63 53.0 3.81e-01 100.0% 33.3%
3422293 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.59 49.0 4.33e-01 100.0% 68.6%
3786830 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.58 47.0 3.40e-01 95.4% 56.4%
4614 109.4.1.225 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GUN4_N 0.58 50.0 4.70e-01 100.0% 90.2%
3167538 603.1.1.3 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.57 43.0 3.59e-01 81.5% 72.2%
3221760 604.1.1.140 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 0.56 43.0 3.99e-01 84.6% 89.4%
3937918 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.56 40.0 3.31e-01 78.5% 53.8%
3591259 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.56 44.0 3.49e-01 96.9% 68.2%
3699795 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.55 38.0 3.48e-01 73.8% 100.0%
3893171 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.53 39.0 4.07e-01 81.5% 91.7%
3219228 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.52 42.0 3.70e-01 98.5% 79.1%
2895133 173.1.1.0 ↗ alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.50 35.0 3.28e-01 93.8% 58.3%
D2 medium residues 332-401
PDB
Domain cluster: rep: F-box_domain_protein__YP_009119351__Pandoravirus_inopinatum__1605721__D428-494
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k20A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.68 59.0 4.40e-01 100.0% 90.5%
2qk2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 58.0 4.04e-01 100.0% 37.6%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.64 49.0 4.31e-01 84.3% 77.4%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 49.0 4.36e-01 90.0% 81.1%
4ga6A02 1.20.970.50 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › 0.61 49.0 3.89e-01 91.4% 65.8%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.60 49.0 4.24e-01 92.9% 99.1%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 45.0 3.28e-01 81.4% 56.7%
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.58 46.0 4.25e-01 91.4% 87.6%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 2.81e-01 92.9% 24.8%
1tazA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.53 46.0 3.03e-01 100.0% 39.1%
4axsA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 44.0 2.99e-01 97.1% 48.8%
1o0sA02 1.20.1370.30 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.53 41.0 3.61e-01 87.1% 87.0%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 42.0 3.44e-01 91.4% 76.6%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 40.0 3.53e-01 81.4% 92.1%
4c0aA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.52 42.0 4.08e-01 95.7% 92.6%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.28e-01 100.0% 88.0%
3k7dA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 38.0 3.16e-01 82.9% 73.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252035 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 70.0 5.21e-01 100.0% 65.6%
3276409 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 66.0 3.94e-01 100.0% 15.0%
3634305 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.74 68.0 5.31e-01 100.0% 80.0%
2387789 109.4.1.132 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 62.0 4.27e-01 95.7% 29.1%
3269472 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 64.0 4.54e-01 100.0% 34.3%
3254746 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 64.0 3.87e-01 100.0% 23.6%
3806290 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.70 62.0 4.78e-01 100.0% 66.3%
3190075 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 61.0 3.90e-01 100.0% 31.0%
3650870 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 59.0 4.63e-01 94.3% 49.7%
4951693 601.1.1.157 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › HEAT_2 0.64 54.0 4.13e-01 95.7% 41.8%
5059222 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.63 42.0 3.64e-01 70.0% 69.2%
3443340 109.4.1.1305 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 0.63 53.0 3.36e-01 95.7% 26.2%
3806181 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 50.0 4.16e-01 90.0% 52.3%
4585871 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 49.0 4.14e-01 90.0% 53.6%
3583865 101.3.1.0 ↗ alpha arrays › HTH › XPC-binding domain › XPC-binding domain 0.61 44.0 4.34e-01 77.1% 77.3%
3269163 150.1.1.31 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Tweety 0.59 39.0 2.68e-01 70.0% 47.2%
5007085 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 46.0 2.97e-01 100.0% 60.8%
3311468 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 45.0 3.50e-01 95.7% 67.1%
3672432 109.46.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40, Beta-prop_IFT122_1st 0.54 45.0 2.81e-01 100.0% 18.3%
5051690 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 46.0 4.24e-01 97.1% 88.9%
3306483 170.1.1.15 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 0.53 37.0 3.42e-01 74.3% 57.9%
3747265 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 45.0 3.75e-01 100.0% 87.7%
4941280 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.51 36.0 2.90e-01 75.7% 57.9%