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hypothetical_protein_pneo_cds_122
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_122__YP_009481732__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009481732 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_122
- Kingdom:
- euk
Quality
54.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 145-256
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.72 | 42.0 | 3.91e-01 | 88.4% | 46.4% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.70 | 48.0 | 4.40e-01 | 90.2% | 54.9% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 41.0 | 4.87e-01 | 87.5% | 90.7% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 39.0 | 3.69e-01 | 80.4% | 47.4% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.64 | 36.0 | 3.71e-01 | 80.4% | 56.6% |
| 3v89A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.62 | 44.0 | 2.78e-01 | 73.2% | 39.0% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 40.0 | 3.72e-01 | 77.7% | 52.8% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 45.0 | 4.26e-01 | 83.0% | 65.6% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 34.0 | 3.23e-01 | 80.4% | 44.2% |
| 1jkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 37.0 | 3.50e-01 | 81.2% | 51.1% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.59 | 44.0 | 4.28e-01 | 83.0% | 70.1% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 4.05e-01 | 94.6% | 61.3% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 3.78e-01 | 71.4% | 91.9% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.58 | 40.0 | 3.37e-01 | 70.5% | 64.4% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.56 | 46.0 | 3.01e-01 | 91.1% | 26.2% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 39.0 | 3.61e-01 | 72.3% | 85.1% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 39.0 | 3.41e-01 | 72.3% | 75.4% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.55 | 44.0 | 4.14e-01 | 87.5% | 70.4% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 3.02e-01 | 83.9% | 37.2% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.54 | 38.0 | 3.52e-01 | 93.8% | 55.0% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 37.0 | 3.38e-01 | 71.4% | 79.2% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 46.0 | 4.18e-01 | 93.8% | 82.9% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 44.0 | 4.42e-01 | 95.5% | 93.2% |
| 4mtuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 36.0 | 3.37e-01 | 72.3% | 93.7% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 41.0 | 2.98e-01 | 83.9% | 68.3% |
| 4uf7B00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 43.0 | 2.94e-01 | 94.6% | 69.7% |
| 5e1vB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.50 | 40.0 | 3.02e-01 | 85.7% | 80.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029448 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.70 | 46.0 | 4.06e-01 | 70.5% | 46.9% |
| 386453 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.70 | 48.0 | 4.19e-01 | 90.2% | 48.8% |
| 4991720 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.70 | 42.0 | 4.06e-01 | 88.4% | 53.6% |
| 4011330 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.69 | 39.0 | 3.66e-01 | 74.1% | 45.9% |
| 4059480 | 881.1.1.37 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 | 0.67 | 44.0 | 3.78e-01 | 91.1% | 42.3% |
| 3854441 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.65 | 45.0 | 3.59e-01 | 70.5% | 57.7% |
| 4028247 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.65 | 52.0 | 3.60e-01 | 86.6% | 54.2% |
| 3272662 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.63 | 54.0 | 3.93e-01 | 92.0% | 96.7% |
| 3818565 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.63 | 46.0 | 4.08e-01 | 92.0% | 54.2% |
| 3251828 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.60 | 40.0 | 3.39e-01 | 73.2% | 41.6% |
| 4015830 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 52.0 | 3.39e-01 | 98.2% | 46.9% |
| 4951451 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 37.0 | 3.42e-01 | 88.4% | 50.3% |
| 3216011 | 243.1.1.109 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382, DUF5382_C | 0.57 | 46.0 | 3.35e-01 | 85.7% | 60.7% |
| 3287572 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 47.0 | 3.91e-01 | 90.2% | 63.1% |
| 3716012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 51.0 | 3.51e-01 | 100.0% | 74.4% |
| 3216630 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 50.0 | 3.49e-01 | 99.1% | 63.0% |
| 3713198 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 35.0 | 3.14e-01 | 87.5% | 43.9% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.56 | 48.0 | 4.21e-01 | 94.6% | 88.8% |
| 3451281 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.56 | 47.0 | 3.44e-01 | 91.1% | 57.0% |
| 4285298 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.55 | 41.0 | 3.46e-01 | 83.0% | 46.3% |
| 3517705 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 3.22e-01 | 100.0% | 57.7% |
| 3062081 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.54 | 47.0 | 3.17e-01 | 94.6% | 55.9% |
| 3615728 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.54 | 46.0 | 3.08e-01 | 91.1% | 58.0% |
| 3285746 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.54 | 38.0 | 3.47e-01 | 74.1% | 79.4% |
| 3518962 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.54 | 45.0 | 3.17e-01 | 92.9% | 87.9% |
| 3213524 | 243.1.1.82 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 | 0.53 | 42.0 | 3.78e-01 | 83.9% | 81.9% |
| 5038819 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 38.0 | 2.94e-01 | 75.0% | 35.1% |
| 4075485 | 11.1.1.649 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BPTA | 0.52 | 46.0 | 3.95e-01 | 98.2% | 93.9% |
| 3531967 | 11.1.1.368 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Neurexophilin | 0.52 | 45.0 | 4.08e-01 | 92.9% | 94.5% |
| 3204864 | 5.1.11.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller | 0.51 | 46.0 | 3.07e-01 | 98.2% | 49.9% |
| 3965397 | 5084.5.4.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X | 0.51 | 41.0 | 3.06e-01 | 84.8% | 49.4% |
| 3184149 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 41.0 | 3.87e-01 | 87.5% | 85.2% |