←Back to structures

hypothetical_protein_pneo_cds_17

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_17__YP_009481627__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481627 ↗
Protein ID:
hypothetical_protein_pneo_cds_17
Kingdom:
euk

Quality

57.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-248
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_41__YP_009482732__Pandoravirus_quercus__2107709__D178-221_233-275
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.61 43.0 4.66e-01 99.0% 89.0%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.60 45.0 4.68e-01 100.0% 91.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 39.0 4.01e-01 82.7% 72.2%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 4.28e-01 100.0% 94.5%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 42.0 3.18e-01 80.6% 59.5%
1r8gA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.56 46.0 3.20e-01 90.8% 56.0%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.55 48.0 4.09e-01 100.0% 90.4%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.54 36.0 4.15e-01 95.9% 100.0%
7zdgC02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 3.03e-01 87.8% 32.3%
3vx4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 3.02e-01 86.7% 32.2%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.53 46.0 4.11e-01 100.0% 91.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.52 38.0 3.86e-01 75.5% 85.3%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 44.0 3.97e-01 98.0% 83.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 45.0 3.65e-01 100.0% 78.5%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 38.0 2.84e-01 82.7% 81.9%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.50 36.0 3.98e-01 99.0% 100.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941955 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 5.16e-01 98.0% 91.1%
4012620 2002.1.1.219 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn 0.60 47.0 3.30e-01 85.7% 62.4%
4117256 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.58 41.0 3.83e-01 90.8% 56.9%
3638185 108.1.1.119 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7514 0.57 48.0 4.14e-01 100.0% 55.9%
5060163 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.57 37.0 4.32e-01 88.8% 100.0%
3280383 327.16.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › YflT 0.57 38.0 4.27e-01 82.7% 98.5%
4970516 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.57 41.0 3.69e-01 100.0% 53.6%
None — 0.56 42.0 3.01e-01 79.6% 78.1%
3938203 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 42.0 3.01e-01 80.6% 68.1%
3668465 304.120.1.9 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N 0.55 41.0 4.43e-01 99.0% 100.0%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.19e-01 99.0% 72.0%
3501565 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 39.0 3.45e-01 99.0% 51.0%
3510539 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 33.0 2.03e-01 77.6% 8.2%
2809 101.1.8.4 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Flp_C 0.54 41.0 3.48e-01 81.6% 97.0%
3587109 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.53 38.0 3.92e-01 99.0% 80.0%
5038487 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.53 37.0 3.89e-01 100.0% 80.0%
3523395 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.52 41.0 2.94e-01 85.7% 77.5%
3030453 304.9.1.22 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › ACT_4 0.52 37.0 4.04e-01 100.0% 94.9%
4959099 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 38.0 4.09e-01 99.0% 95.0%
None — 0.51 39.0 2.84e-01 85.7% 76.9%
D2 high residues 519-682
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_69__YP_009429953__Pandoravirus_salinus__1349410__D457-567_599-657
D3 medium residues 9-100
PDB