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hypothetical_protein_pneo_cds_22
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_22__YP_009481632__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009481632 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_22
- Kingdom:
- euk
Quality
48.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 390-443
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 65.0 | 5.46e-01 | 96.3% | 74.7% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.76 | 56.0 | 4.65e-01 | 79.6% | 62.8% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 56.0 | 4.27e-01 | 79.6% | 68.6% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 61.0 | 4.66e-01 | 87.0% | 57.0% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 58.0 | 4.65e-01 | 88.9% | 68.6% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.71 | 54.0 | 5.54e-01 | 81.5% | 92.3% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.71 | 55.0 | 4.74e-01 | 83.3% | 57.8% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 51.0 | 5.24e-01 | 75.9% | 98.0% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 54.0 | 4.64e-01 | 87.0% | 85.2% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 55.0 | 4.32e-01 | 88.9% | 48.7% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 54.0 | 4.77e-01 | 87.0% | 68.8% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.68 | 56.0 | 4.03e-01 | 92.6% | 54.6% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 57.0 | 5.28e-01 | 92.6% | 82.6% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 45.0 | 3.40e-01 | 77.8% | 29.6% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 54.0 | 4.62e-01 | 92.6% | 68.6% |
| 5jbdA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 48.0 | 3.13e-01 | 81.5% | 80.7% |
| 3lewA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 52.0 | 3.22e-01 | 94.4% | 48.1% |
| 3ihpA03 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 54.0 | 3.30e-01 | 96.3% | 18.5% |
| 3iv0A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 54.0 | 3.16e-01 | 100.0% | 15.0% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 50.0 | 4.72e-01 | 92.6% | 83.1% |
| 1h2tC03 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 47.0 | 3.11e-01 | 90.7% | 49.6% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.58 | 49.0 | 4.46e-01 | 96.3% | 78.4% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 42.0 | 2.91e-01 | 83.3% | 29.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 45.0 | 3.76e-01 | 94.4% | 85.3% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.56 | 37.0 | 3.19e-01 | 70.4% | 85.9% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.52 | 41.0 | 3.88e-01 | 85.2% | 75.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3258193 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.77 | 54.0 | 4.93e-01 | 74.1% | 57.1% |
| 3595648 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 66.0 | 3.62e-01 | 96.3% | 18.5% |
| 5065059 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.74 | 56.0 | 5.23e-01 | 79.6% | 73.8% |
| 3578694 | 192.5.1.2 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Tiam_CC_Ex | 0.74 | 57.0 | 5.03e-01 | 81.5% | 85.3% |
| 3587855 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 56.0 | 5.80e-01 | 83.3% | 96.0% |
| 5043711 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.73 | 53.0 | 4.04e-01 | 77.8% | 36.8% |
| 3171336 | 109.4.1.1450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29050 | 0.73 | 64.0 | 3.69e-01 | 100.0% | 16.2% |
| 1268318 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.73 | 53.0 | 4.08e-01 | 77.8% | 67.8% |
| 4997186 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.72 | 53.0 | 3.88e-01 | 77.8% | 31.4% |
| 3595315 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.72 | 57.0 | 4.45e-01 | 85.2% | 46.4% |
| 3785809 | 604.1.1.3 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MAP65_ASE1 | 0.72 | 57.0 | 4.57e-01 | 85.2% | 54.0% |
| 3274712 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.71 | 53.0 | 3.40e-01 | 79.6% | 66.3% |
| 3725560 | 150.1.2.19 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › COQ7 | 0.71 | 59.0 | 3.96e-01 | 92.6% | 68.3% |
| 4022421 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.71 | 56.0 | 3.74e-01 | 85.2% | 35.0% |
| 3970898 | 6119.1.1.0 ↗ | alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB | 0.69 | 51.0 | 5.34e-01 | 77.8% | 94.0% |
| 3275809 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.68 | 57.0 | 3.55e-01 | 100.0% | 61.2% |
| 3553833 | 5086.1.1.102 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp | 0.67 | 56.0 | 3.82e-01 | 92.6% | 30.0% |
| 2325657 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.67 | 52.0 | 3.98e-01 | 88.9% | 50.4% |
| 4199388 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.64 | 43.0 | 3.17e-01 | 70.4% | 78.6% |
| 3223029 | 364.1.1.1 ↗ | few secondary structure elements › TAZ domain › TAZ domain › TAZ domain › zf-TAZ | 0.63 | 52.0 | 4.40e-01 | 98.1% | 58.0% |
| 3367509 | 101.34.1.1 ↗ | alpha arrays › HTH › Transcription factor LEAFY › Transcription factor LEAFY › C_LFY_FLO | 0.62 | 56.0 | 3.91e-01 | 100.0% | 33.3% |
| 4095063 | 5086.1.1.69 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Med29 | 0.61 | 49.0 | 4.01e-01 | 92.6% | 47.3% |
| 4534689 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.60 | 49.0 | 3.21e-01 | 98.1% | 73.8% |
| 5040221 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.60 | 46.0 | 3.01e-01 | 90.7% | 17.7% |
| 4620061 | 4043.1.1.1 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 0.57 | 48.0 | 3.85e-01 | 98.1% | 74.8% |
| 3317109 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.55 | 45.0 | 2.87e-01 | 92.6% | 30.5% |