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hypothetical_protein_pneo_cds_277

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_277__YP_009481887__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481887 ↗
Protein ID:
hypothetical_protein_pneo_cds_277
Kingdom:
euk

Quality

67.6 mean pLDDT

Taxonomy

TaxID: 2107708

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 high residues 230-257_275-315_350-399
PDB
D3 medium residues 3-54
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 62.0 7.01e-01 73.1% 100.0%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 67.0 7.04e-01 84.6% 95.7%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 61.0 6.60e-01 86.5% 100.0%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 55.0 6.02e-01 78.8% 90.2%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.78 70.0 4.38e-01 100.0% 37.8%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 65.0 5.30e-01 100.0% 65.7%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 64.0 5.43e-01 98.1% 58.6%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.73 51.0 3.56e-01 92.3% 24.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 58.0 3.52e-01 100.0% 17.5%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 57.0 4.19e-01 98.1% 57.0%
2aw6A02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 55.0 3.63e-01 94.2% 61.5%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 52.0 3.85e-01 88.5% 64.0%
4pe3A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.64 50.0 3.10e-01 86.5% 70.2%
4rg6A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 54.0 4.03e-01 96.2% 88.0%
2r7rA08 1.20.120.1400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 47.0 4.04e-01 84.6% 84.9%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 55.0 3.96e-01 100.0% 56.1%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.62 52.0 4.04e-01 100.0% 66.4%
5ywwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 44.0 3.50e-01 82.7% 50.4%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 50.0 3.38e-01 92.3% 60.4%
4mcoA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.58 44.0 2.83e-01 88.5% 69.6%
2ixoA02 1.20.120.1150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain 0.58 39.0 3.23e-01 73.1% 86.8%
5c5dD00 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 51.0 3.62e-01 100.0% 96.2%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.58 47.0 4.24e-01 92.3% 90.4%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 42.0 3.96e-01 90.4% 93.1%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 3.56e-01 88.5% 59.6%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.55 45.0 3.89e-01 88.5% 59.0%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.53 47.0 3.89e-01 100.0% 69.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.25e-01 84.6% 100.0%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 3.49e-01 100.0% 75.2%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300168 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 68.0 6.22e-01 75.0% 60.0%
3447860 145.1.1.5 alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.91 67.0 7.11e-01 76.9% 88.9%
3939710 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 72.0 6.69e-01 94.2% 70.8%
3461050 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.88 68.0 6.96e-01 84.6% 86.0%
3396126 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.88 71.0 4.18e-01 88.5% 12.3%
2860146 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.88 68.0 6.81e-01 84.6% 81.1%
3315130 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.88 64.0 7.13e-01 78.8% 100.0%
2420136 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 68.0 6.77e-01 84.6% 81.1%
3643363 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 63.0 6.95e-01 76.9% 100.0%
3390129 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.87 74.0 4.64e-01 94.2% 20.0%
3171073 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 76.0 5.78e-01 98.1% 43.5%
3660681 207.1.1.246 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box_5 0.87 62.0 3.64e-01 76.9% 11.1%
3693224 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 63.0 6.94e-01 80.8% 100.0%
4422459 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 72.0 6.47e-01 94.2% 67.1%
3349925 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 6.58e-01 76.9% 88.9%
3314603 145.1.1.5 alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.86 61.0 6.52e-01 76.9% 86.7%
3299681 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 69.0 7.04e-01 90.4% 90.0%
3819371 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 6.11e-01 84.6% 72.7%
4284024 207.1.1.224 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.86 76.0 4.68e-01 98.1% 39.9%
3837757 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 64.0 5.66e-01 84.6% 56.0%
3443195 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.85 61.0 6.69e-01 75.0% 97.5%
3438368 145.1.1.5 alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 62.0 6.59e-01 80.8% 88.9%
3347634 145.1.1.5 alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 68.0 7.15e-01 88.5% 100.0%
3324307 145.1.1.5 alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 66.0 6.14e-01 88.5% 67.7%
3370474 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 65.0 6.01e-01 90.4% 66.2%
3404584 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.85 68.0 7.22e-01 88.5% 100.0%
3720343 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 61.0 5.14e-01 78.8% 47.1%
3189958 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.84 66.0 6.94e-01 86.5% 97.8%
3698443 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 61.0 6.20e-01 76.9% 80.0%
3399647 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.83 67.0 6.63e-01 92.3% 83.6%
3202188 207.1.1.309 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.83 71.0 4.08e-01 96.2% 27.2%
3316546 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 63.0 6.01e-01 90.4% 71.7%
3430952 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.83 72.0 4.14e-01 98.1% 21.3%
3636480 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.83 63.0 6.74e-01 86.5% 95.6%
3422989 207.1.1.79 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.83 72.0 4.15e-01 98.1% 20.9%
3727179 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 65.0 6.91e-01 92.3% 100.0%
3733544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.82 73.0 4.12e-01 100.0% 14.8%
3848693 145.1.1.37 alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.82 73.0 4.29e-01 100.0% 76.5%
3339201 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 65.0 6.88e-01 94.2% 100.0%
3667444 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.82 64.0 6.39e-01 84.6% 96.3%
3655771 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 61.0 4.92e-01 88.5% 42.0%
3826138 207.1.1.79 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.82 72.0 4.17e-01 98.1% 32.8%
3319774 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 73.0 6.43e-01 100.0% 96.0%
3639389 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 70.0 4.04e-01 98.1% 28.9%
3434120 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.81 57.0 6.26e-01 75.0% 100.0%
3476446 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 74.0 6.06e-01 100.0% 63.3%
None 0.81 69.0 4.22e-01 94.2% 44.1%
3457731 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 6.06e-01 96.2% 68.8%
3829036 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 5.61e-01 94.2% 97.8%
3467883 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.80 54.0 5.20e-01 71.2% 63.3%
3683657 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.80 60.0 5.14e-01 90.4% 50.6%
3679680 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 5.45e-01 100.0% 98.3%
3450600 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.80 62.0 6.53e-01 90.4% 97.8%
3433159 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 57.0 6.22e-01 78.8% 100.0%
3439829 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 5.85e-01 100.0% 58.9%
3461664 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 61.0 6.45e-01 86.5% 97.8%
3184851 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 5.91e-01 100.0% 62.4%
3423604 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 62.0 6.32e-01 84.6% 88.0%
3727492 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 61.0 6.39e-01 88.5% 97.8%
3916304 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.79 71.0 5.86e-01 100.0% 62.2%
3321664 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 68.0 4.00e-01 98.1% 31.3%
3643098 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.78 60.0 5.94e-01 86.5% 80.0%
3469135 207.1.1.134 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.78 69.0 4.09e-01 100.0% 98.2%
3441758 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 69.0 4.11e-01 100.0% 37.4%
3403835 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.78 69.0 5.87e-01 100.0% 67.1%
3309226 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 68.0 5.27e-01 100.0% 50.4%
3698257 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.79e-01 96.2% 73.8%
3222836 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.77 55.0 5.94e-01 80.8% 100.0%
3204329 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 68.0 5.40e-01 100.0% 55.2%
3381011 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.05e-01 98.1% 99.2%
4012180 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.77 68.0 4.98e-01 100.0% 40.0%
3452927 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 59.0 6.20e-01 90.4% 97.8%
3448206 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 60.0 5.98e-01 92.3% 83.6%
3437951 207.1.1.79 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.76 67.0 3.89e-01 100.0% 27.4%
3725732 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 69.0 5.91e-01 100.0% 72.5%
3650217 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.76 65.0 5.78e-01 94.2% 95.9%
3833961 207.1.1.183 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370 0.76 64.0 3.77e-01 94.2% 29.8%
4021839 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 61.0 5.21e-01 90.4% 62.4%
3677573 207.1.1.134 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.76 66.0 3.99e-01 100.0% 35.4%
3739768 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 5.69e-01 100.0% 82.4%
3422849 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 61.0 6.26e-01 92.3% 94.0%
3185810 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.75 53.0 5.90e-01 75.0% 100.0%
3730335 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.75 62.0 6.28e-01 92.3% 96.0%
3810013 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 63.0 5.93e-01 94.2% 93.8%
3312286 207.1.1.134 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.74 65.0 3.84e-01 100.0% 31.4%
3180622 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.73 58.0 5.87e-01 88.5% 94.0%
3226289 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 52.0 5.51e-01 82.7% 100.0%
3834480 207.1.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.73 62.0 3.70e-01 96.2% 100.0%
3443498 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.73 63.0 5.32e-01 96.2% 64.7%
3464778 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.44e-01 100.0% 76.5%
3834035 145.1.1.26 alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.72 63.0 3.70e-01 100.0% 30.8%
3261484 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.70 60.0 5.67e-01 100.0% 90.8%
3697020 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 58.0 3.56e-01 100.0% 29.7%
3726805 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.65 54.0 5.16e-01 98.1% 84.4%
3315665 109.4.1.1146 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.60 50.0 3.77e-01 100.0% 65.0%