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hypothetical_protein_pneo_cds_358
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_358__YP_009481968__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009481968 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_358
- Kingdom:
- euk
Quality
60.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-87
D2
medium
residues 88-144_176-303
Domain cluster:
rep: hypothetical_protein_pqer_cds_416__YP_009483107__Pandoravirus_quercus__2107709__D127-301_331-345
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 23.0 | 3.26e-01 | 89.2% | 67.0% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 23.0 | 3.27e-01 | 83.2% | 75.0% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.56 | 25.0 | 3.17e-01 | 93.5% | 67.5% |
| 4ix3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 24.0 | 3.05e-01 | 74.6% | 69.0% |
| 1c8uA02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 31.0 | 3.90e-01 | 91.4% | 96.5% |
| 1jcfA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 25.0 | 3.44e-01 | 93.5% | 96.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4106397 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 23.0 | 3.55e-01 | 83.8% | 72.0% |
| 3728854 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 20.0 | 3.51e-01 | 89.7% | 75.4% |
| 3519114 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 25.0 | 3.26e-01 | 94.1% | 60.9% |
| 3461521 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 28.0 | 3.43e-01 | 94.6% | 63.5% |
| 3214097 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.59 | 22.0 | 3.03e-01 | 89.7% | 65.9% |
| 4196676 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 23.0 | 3.00e-01 | 93.0% | 66.0% |
| 3951281 | 109.3.1.160 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › EccD | 0.51 | 37.0 | 3.70e-01 | 95.1% | 70.3% |
| 3223800 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.50 | 35.0 | 3.84e-01 | 71.9% | 94.2% |