←Back to structures
hypothetical_protein_pneo_cds_37
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_37__YP_009481647__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009481647 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_37
- Kingdom:
- euk
Quality
73.9
mean pLDDT
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-106
D2
medium
residues 128-226
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.74 | 31.0 | 2.86e-01 | 89.9% | 31.2% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 35.0 | 3.22e-01 | 71.7% | 46.6% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.52 | 25.0 | 3.17e-01 | 73.7% | 82.0% |
| 1tuhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.47e-01 | 77.8% | 99.2% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 35.0 | 3.05e-01 | 99.0% | 48.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3804378 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.74 | 28.0 | 3.21e-01 | 81.8% | 45.3% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.64 | 31.0 | 2.80e-01 | 90.9% | 34.6% |
| 3332345 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.57 | 42.0 | 2.80e-01 | 79.8% | 36.9% |
| 3741132 | 2004.1.1.172 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DAP3 | 0.54 | 38.0 | 2.67e-01 | 72.7% | 30.8% |
| 3790375 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 34.0 | 3.13e-01 | 98.0% | 50.4% |
| None | — | 0.53 | 42.0 | 3.07e-01 | 86.9% | 77.3% | |
| 3686259 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 38.0 | 2.72e-01 | 75.8% | 57.3% |
| 3194847 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.53 | 40.0 | 2.47e-01 | 80.8% | 41.4% |
| 4030290 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.53 | 39.0 | 2.63e-01 | 84.8% | 20.3% |
| 3734132 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.52 | 38.0 | 2.73e-01 | 77.8% | 90.5% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.51 | 32.0 | 2.47e-01 | 90.9% | 28.0% |
| 3743841 | 10.12.1.101 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 | 0.51 | 35.0 | 2.43e-01 | 70.7% | 46.7% |
| 3691938 | 219.1.1.17 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 | 0.50 | 35.0 | 2.28e-01 | 72.7% | 30.0% |
D3
medium
residues 246-325
D4
medium
residues 326-485