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hypothetical_protein_pneo_cds_400

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_400__YP_009482010__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482010 ↗
Protein ID:
hypothetical_protein_pneo_cds_400
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-27_53-131
PDB
D2 medium residues 241-364
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp0227__YP_009119196__Pandoravirus_inopinatum__1605721__D241-268_306-396
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xceA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.76 70.0 5.53e-01 100.0% 64.8%
2ajaA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 69.0 4.91e-01 100.0% 47.2%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.74 68.0 5.56e-01 100.0% 70.1%
4bszB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 68.0 6.33e-01 100.0% 95.3%
4zhbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 53.0 5.73e-01 75.0% 94.2%
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 67.0 6.08e-01 100.0% 95.7%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 63.0 4.67e-01 100.0% 59.9%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 52.0 4.73e-01 98.4% 84.4%
2y4tB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 3.68e-01 100.0% 36.2%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.86e-01 99.2% 50.4%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 44.0 4.59e-01 92.7% 92.2%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 47.0 4.85e-01 100.0% 100.0%
2p58C00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.65e-01 94.4% 98.2%
4jhrB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 3.47e-01 92.7% 72.3%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.52 46.0 3.98e-01 100.0% 68.3%
7cboA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 3.32e-01 100.0% 69.5%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 4.22e-01 88.7% 100.0%
1dlcA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.50 35.0 2.95e-01 72.6% 69.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4349221 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.80 75.0 6.02e-01 100.0% 55.1%
3267273 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.76 65.0 6.71e-01 100.0% 97.4%
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.76 70.0 5.41e-01 100.0% 47.3%
3257672 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.76 70.0 4.47e-01 100.0% 23.5%
3619592 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.74 69.0 5.20e-01 100.0% 45.2%
4315375 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 55.0 5.61e-01 76.6% 92.5%
3484295 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 66.0 5.08e-01 100.0% 43.6%
4078847 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.74 68.0 5.23e-01 100.0% 49.3%
3276205 109.4.1.1349 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29011 0.73 66.0 5.00e-01 97.6% 56.8%
3274632 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 66.0 4.07e-01 100.0% 21.4%
3262155 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 67.0 5.12e-01 100.0% 57.0%
3480260 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.72 64.0 5.53e-01 100.0% 64.3%
3296087 109.3.1.205 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28612 0.72 64.0 5.25e-01 96.8% 84.1%
3834805 109.3.1.397 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NPR1_like_C, Ank_2 0.72 66.0 5.01e-01 100.0% 50.7%
3259494 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 65.0 4.62e-01 100.0% 48.8%
3830116 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.71 65.0 5.60e-01 100.0% 73.2%
3273023 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 65.0 4.41e-01 100.0% 37.4%
3253180 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.70 64.0 5.28e-01 100.0% 82.8%
3276054 109.4.1.1349 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29011 0.68 61.0 3.97e-01 99.2% 22.4%
3520940 109.4.1.1641 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long 0.65 57.0 3.66e-01 97.6% 42.7%
3682468 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.65 59.0 4.92e-01 100.0% 87.0%
3575440 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.81e-01 100.0% 69.5%
3585502 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.62 53.0 3.65e-01 93.5% 29.6%
3931153 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 55.0 4.72e-01 100.0% 74.1%
3269472 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 54.0 4.58e-01 100.0% 63.8%
3350773 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 52.0 4.68e-01 100.0% 73.7%
3438125 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 51.0 4.58e-01 100.0% 84.3%
3672160 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.58 52.0 4.47e-01 100.0% 76.5%
3306414 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 45.0 4.67e-01 88.7% 89.6%
3655274 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 52.0 4.09e-01 100.0% 60.0%
3457806 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.57 50.0 4.37e-01 100.0% 62.5%
3679151 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 49.0 4.73e-01 96.8% 90.7%
3188106 109.4.1.3556 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3, TPR_8, TPR_10, TPR_16 0.56 49.0 3.13e-01 99.2% 18.1%
3338063 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.56 49.0 4.81e-01 100.0% 90.0%
3837742 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 49.0 4.78e-01 100.0% 89.3%
4013703 109.4.1.1244 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_30 0.56 48.0 4.71e-01 99.2% 96.4%
3421937 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 49.0 4.06e-01 100.0% 66.0%
3451139 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 49.0 4.45e-01 100.0% 85.1%
3196470 109.59.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.55 37.0 4.17e-01 74.2% 95.5%
3671345 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 49.0 4.74e-01 100.0% 90.0%
3679964 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 47.0 4.59e-01 100.0% 91.4%
D3 medium residues 365-499
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 44.0 5.08e-01 75.6% 90.7%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 56.0 5.38e-01 98.5% 76.1%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 55.0 5.07e-01 98.5% 88.5%
3keaA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.62 56.0 4.40e-01 100.0% 62.9%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 4.14e-01 100.0% 48.9%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 51.0 4.02e-01 98.5% 42.3%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 5.01e-01 99.3% 89.1%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.55 41.0 4.12e-01 77.8% 99.3%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.53 46.0 4.43e-01 94.8% 96.8%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.53 43.0 3.89e-01 89.6% 90.8%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 3.44e-01 90.4% 46.0%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 4.02e-01 98.5% 74.1%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 45.0 3.42e-01 99.3% 55.2%
8a3tD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 3.36e-01 100.0% 37.1%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 37.0 3.08e-01 77.0% 83.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3832196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 48.0 5.30e-01 77.0% 92.4%
3236498 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 60.0 5.38e-01 100.0% 71.1%
3579972 109.4.1.324 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Proteasom_PSMB 0.66 57.0 5.25e-01 95.6% 73.1%
3472272 109.4.1.374 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_S4 0.62 54.0 4.13e-01 94.8% 82.0%
3582684 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.61e-01 98.5% 69.3%
3668752 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 49.0 4.40e-01 98.5% 60.5%
3805550 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 54.0 5.12e-01 100.0% 87.9%
3934050 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 4.28e-01 100.0% 77.1%
3562635 109.4.1.651 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_2 0.59 53.0 4.06e-01 100.0% 53.5%
3818259 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 51.0 4.31e-01 98.5% 55.7%
5039560 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 4.77e-01 100.0% 83.7%
3684464 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.91e-01 98.5% 40.3%
3834205 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 49.0 4.65e-01 91.9% 90.3%
3346822 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.58 49.0 4.01e-01 97.0% 49.4%
3278691 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 43.0 3.42e-01 77.0% 73.6%
3267143 109.4.1.584 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_C 0.57 42.0 4.12e-01 94.1% 70.0%
3326751 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 49.0 3.30e-01 99.3% 23.8%
3264842 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 48.0 4.11e-01 97.0% 88.9%
3339158 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.55 47.0 3.32e-01 98.5% 27.4%
3468311 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.54 46.0 3.43e-01 93.3% 90.1%
4464029 5000.6.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 › Cut8 0.54 48.0 4.18e-01 100.0% 82.8%
4959564 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.54 42.0 3.47e-01 81.5% 86.7%
3421182 109.4.1.603 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF1_subA 0.53 43.0 4.21e-01 89.6% 92.0%
3496682 109.4.1.146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load 0.52 45.0 3.47e-01 100.0% 40.0%
3832674 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.52 44.0 3.71e-01 94.1% 58.1%
3246495 109.4.1.72 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.51 45.0 3.08e-01 100.0% 27.3%
3738538 109.37.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Anion channel SLAC1-related › Anion channel SLAC1-related › SLAC1 0.51 45.0 3.38e-01 100.0% 65.1%
D4 medium residues 500-577_593-653
PDB