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hypothetical_protein_pneo_cds_446

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_446__YP_009482056__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482056 ↗
Protein ID:
hypothetical_protein_pneo_cds_446
Kingdom:
euk

Quality

64.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-85
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_91__YP_009480775__Pandoravirus_macleodensis__2107707__D23-87
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zgzA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.67 39.0 3.01e-01 76.2% 25.4%
3nynA03 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.67 49.0 4.91e-01 77.5% 97.5%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.66 47.0 3.94e-01 76.2% 96.5%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.65 47.0 3.69e-01 77.5% 72.5%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.64 49.0 3.80e-01 87.5% 90.0%
3zibC00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 45.0 4.29e-01 100.0% 64.6%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.61 47.0 3.89e-01 83.7% 81.8%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.61 42.0 3.94e-01 100.0% 58.8%
3cl3A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 44.0 4.29e-01 77.5% 86.4%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.60 43.0 3.74e-01 77.5% 86.4%
1cmzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.59 42.0 4.29e-01 77.5% 97.5%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.59 43.0 3.79e-01 80.0% 90.6%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 41.0 4.03e-01 73.8% 82.4%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.58 40.0 3.65e-01 72.5% 84.7%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 4.15e-01 77.5% 78.6%
3vw5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 48.0 3.18e-01 100.0% 88.2%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.55 47.0 3.15e-01 90.0% 81.6%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 38.0 3.23e-01 75.0% 92.6%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 39.0 4.00e-01 78.8% 89.9%
3rlfF04 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.54 40.0 2.95e-01 81.2% 64.1%
3mpiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 41.0 3.62e-01 100.0% 55.4%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.53 38.0 3.38e-01 77.5% 81.6%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 43.0 3.14e-01 90.0% 64.9%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.52 38.0 3.74e-01 96.2% 72.1%
4py6C00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 45.0 3.88e-01 97.5% 73.2%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 38.0 3.88e-01 86.3% 84.4%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.51 39.0 3.70e-01 100.0% 69.1%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 42.0 3.02e-01 92.5% 81.1%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 34.0 3.45e-01 83.7% 67.5%
6ks6q01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 42.0 3.03e-01 98.8% 63.4%
2yw5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 44.0 3.70e-01 97.5% 62.3%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.50 42.0 3.38e-01 93.8% 72.4%
3e0zA00 1.20.58.1400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Domain of unknown function DUF3837 0.50 38.0 3.54e-01 85.0% 100.0%
2g47A04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 35.0 2.56e-01 73.8% 66.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715230 601.1.2.82 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › GPI2 0.69 53.0 4.03e-01 82.5% 81.6%
5046473 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.64 46.0 4.46e-01 77.5% 88.9%
5065815 601.35.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Nucleotidyl transferase L544 helical domain › Nucleotidyl transferase L544 helical domain 0.63 45.0 3.96e-01 77.5% 76.0%
3471868 6171.1.1.1 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.62 40.0 3.49e-01 97.5% 45.2%
4513657 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 44.0 3.30e-01 75.0% 49.0%
3376073 631.1.1.1 ↗ alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.62 49.0 3.71e-01 87.5% 89.7%
5001143 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.62 44.0 3.77e-01 76.2% 98.6%
3687558 101.1.22.0 ↗ alpha arrays › HTH › HTH › double HTH 0.62 53.0 3.97e-01 97.5% 48.8%
4317212 131.2.1.3 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd 0.62 44.0 3.03e-01 98.8% 21.8%
2992201 6171.1.1.1 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.62 44.0 3.89e-01 73.8% 60.0%
3627314 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.62 46.0 2.81e-01 88.7% 12.9%
3788354 108.1.1.213 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2, EF-hand_7 0.59 43.0 3.99e-01 78.8% 81.9%
4000268 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.59 41.0 3.48e-01 97.5% 43.0%
4030342 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.57 49.0 2.98e-01 98.8% 46.3%
5027312 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.57 43.0 3.94e-01 78.8% 82.5%
3998578 142.1.1.41 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC 0.57 31.0 3.37e-01 83.7% 63.1%
3492714 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 43.0 3.33e-01 100.0% 36.1%
5058148 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.57 43.0 4.06e-01 82.5% 88.0%
3803573 7022.1.1.0 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein 0.57 41.0 3.06e-01 77.5% 41.4%
3513473 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 41.0 3.39e-01 100.0% 41.3%
3740089 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.56 40.0 4.39e-01 98.8% 92.3%
3764093 6171.1.1.1 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.55 40.0 3.83e-01 77.5% 69.5%
3972373 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 45.0 3.65e-01 96.2% 56.6%
3612320 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.55 46.0 2.97e-01 100.0% 96.1%
3601444 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 2.69e-01 88.7% 16.5%
3520876 3352.1.1.19 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.54 40.0 2.62e-01 81.2% 96.0%
4020885 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 3.00e-01 82.5% 41.3%
5041402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 34.0 3.70e-01 92.5% 78.5%
4307474 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.54 44.0 2.81e-01 96.2% 96.3%
3785931 195.1.1.3 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.54 40.0 3.45e-01 80.0% 60.8%
3993627 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 4.32e-01 96.2% 94.3%
5047833 4126.1.1.0 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase 0.53 42.0 3.39e-01 88.7% 89.7%
4528918 1079.1.1.13 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp 0.52 47.0 3.65e-01 100.0% 82.3%
5029782 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 41.0 3.95e-01 85.0% 90.0%
3589948 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.50 37.0 3.10e-01 98.8% 44.3%
D2 medium residues 126-235_255-290
PDB