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hypothetical_protein_pneo_cds_447
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_447__YP_009482057__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482057 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_447
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 339-398
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bszB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.82 | 73.0 | 5.33e-01 | 96.7% | 47.3% |
| 5h28A01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.82 | 73.0 | 5.43e-01 | 98.3% | 48.3% |
| 4rlyA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.81 | 69.0 | 4.27e-01 | 91.7% | 22.1% |
| 4zhbA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.81 | 66.0 | 5.45e-01 | 88.3% | 61.5% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.69 | 60.0 | 5.65e-01 | 98.3% | 98.6% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.63 | 42.0 | 4.16e-01 | 70.0% | 95.4% |
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.63 | 52.0 | 4.71e-01 | 95.0% | 86.0% |
| 1wjtA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.60 | 48.0 | 4.22e-01 | 96.7% | 81.6% |
| 2p58C00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 51.0 | 4.24e-01 | 100.0% | 58.0% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 50.0 | 3.38e-01 | 100.0% | 76.8% |
| 2vtyA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 44.0 | 3.41e-01 | 88.3% | 45.8% |
| 1axdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 44.0 | 3.73e-01 | 96.7% | 91.9% |
| 5tpmB00 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 45.0 | 3.46e-01 | 96.7% | 77.3% |
| 3fmsA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 44.0 | 3.39e-01 | 96.7% | 70.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3722207 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.87 | 73.0 | 4.56e-01 | 90.0% | 22.5% |
| 4989327 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.74 | 51.0 | 3.99e-01 | 73.3% | 42.3% |
| 4191801 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.74 | 63.0 | 5.88e-01 | 96.7% | 97.3% |
| 4040561 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.73 | 62.0 | 5.84e-01 | 96.7% | 97.3% |
| 4992791 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 48.0 | 3.30e-01 | 80.0% | 27.8% |
| 3244495 | 3324.1.1.0 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.62 | 42.0 | 3.28e-01 | 85.0% | 34.4% |
| 3735385 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.60 | 46.0 | 3.87e-01 | 83.3% | 97.1% |
| 4023609 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.57 | 39.0 | 3.46e-01 | 71.7% | 65.3% |
| 3814949 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.56 | 48.0 | 3.81e-01 | 100.0% | 70.0% |
| 3218552 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.55 | 38.0 | 3.55e-01 | 73.3% | 69.6% |
| 3341577 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.55 | 37.0 | 3.69e-01 | 70.0% | 90.8% |