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hypothetical_protein_pneo_cds_44

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_44__YP_009481654__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481654 ↗
Protein ID:
hypothetical_protein_pneo_cds_44
Kingdom:
euk

Quality

73.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-94
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_1032__YP_009482642__Pandoravirus_neocaledonia__2107708__D13-104
D2 medium residues 95-210
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_672__YP_009481356__Pandoravirus_macleodensis__2107707__D131-237
D3 medium residues 211-331
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_976__YP_009482586__Pandoravirus_neocaledonia__2107708__D186-274
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 4.04e-01 97.5% 73.5%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 53.0 4.03e-01 95.0% 56.4%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 54.0 4.69e-01 95.9% 92.3%
1xqrA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 53.0 4.11e-01 96.7% 67.0%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 53.0 3.58e-01 100.0% 49.4%
5nnpE01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 50.0 3.39e-01 93.4% 24.3%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 51.0 4.05e-01 97.5% 71.7%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 46.0 4.69e-01 84.3% 95.9%
1xd4A03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.57 43.0 3.55e-01 81.0% 61.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 27.0 3.33e-01 73.6% 75.7%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.54 37.0 3.00e-01 70.2% 84.7%
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.52 43.0 4.40e-01 91.7% 92.5%
3cllA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 37.0 2.98e-01 71.9% 82.2%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 42.0 3.29e-01 88.4% 81.4%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 38.0 3.81e-01 79.3% 77.5%
6orcB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 41.0 4.00e-01 92.6% 80.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015652 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 43.0 3.91e-01 85.1% 50.0%
3499180 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.58e-01 100.0% 99.2%
3743542 109.21.1.9 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup84_Nup100 0.62 56.0 3.46e-01 100.0% 95.2%
3252617 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 56.0 3.94e-01 100.0% 52.6%
4074143 109.30.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 0.61 48.0 3.15e-01 84.3% 97.5%
4030373 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 42.0 3.85e-01 71.9% 88.5%
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.60 54.0 4.24e-01 100.0% 77.7%
3274366 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.60e-01 100.0% 60.6%
3621112 109.30.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 0.59 51.0 3.41e-01 93.4% 27.1%
3467619 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.58 43.0 4.46e-01 87.6% 82.6%
3429945 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 4.36e-01 92.6% 87.4%
3432794 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 4.42e-01 82.6% 94.4%
3336508 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 47.0 4.19e-01 93.4% 74.4%
3280116 109.4.1.212 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_20 0.56 39.0 3.76e-01 78.5% 62.1%
3352797 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.55 46.0 3.81e-01 94.2% 58.7%
3307499 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.55 47.0 3.09e-01 95.0% 39.3%
3655627 109.4.1.1424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, TPR_24 0.54 46.0 3.91e-01 94.2% 67.3%
3233038 226.1.1.41 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › DUF7754 0.54 44.0 3.56e-01 90.9% 60.4%
3504810 109.4.1.921 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140-IFT172 0.53 47.0 3.61e-01 99.2% 61.0%
3447684 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 45.0 4.35e-01 90.9% 86.7%
3829076 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.53 45.0 4.34e-01 95.0% 96.4%
3828012 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.53 40.0 4.15e-01 86.8% 90.0%
3429481 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 45.0 3.98e-01 95.9% 71.7%
3827232 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.52 40.0 3.25e-01 83.5% 81.2%
3469136 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 43.0 4.09e-01 91.7% 86.2%
3443426 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.52 43.0 4.04e-01 91.7% 80.7%
3341938 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.52 38.0 3.99e-01 85.1% 89.5%
4012252 5048.1.1.0 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like 0.51 41.0 3.30e-01 86.8% 84.8%
3883830 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 2.97e-01 90.9% 42.2%
3651384 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.50 42.0 3.76e-01 93.4% 79.4%