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hypothetical_protein_pneo_cds_458

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_458__YP_009482068__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482068 ↗
Protein ID:
hypothetical_protein_pneo_cds_458
Kingdom:
euk

Quality

83.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-71
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.66 47.0 4.32e-01 77.6% 76.9%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 48.0 3.79e-01 86.2% 48.5%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.64 49.0 4.04e-01 86.2% 51.4%
1aa7A02 1.10.10.180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 0.63 45.0 4.12e-01 77.6% 66.7%
1xhbA02 1.10.8.460 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ppGaNTase-T1 linker domain-like 0.61 44.0 4.28e-01 81.0% 74.2%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 50.0 3.28e-01 100.0% 47.5%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.53 37.0 3.59e-01 75.9% 66.2%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 38.0 3.65e-01 81.0% 89.9%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.52 33.0 3.00e-01 87.9% 44.0%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.48e-01 91.4% 96.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 60.0 5.63e-01 81.0% 68.6%
3210778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 61.0 5.66e-01 84.5% 69.3%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 59.0 5.41e-01 81.0% 64.0%
3643709 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 58.0 5.95e-01 79.3% 87.3%
3829887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 54.0 5.50e-01 72.4% 87.3%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 58.0 5.12e-01 82.8% 57.6%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 56.0 5.15e-01 79.3% 62.7%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 56.0 5.76e-01 79.3% 89.1%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 56.0 5.47e-01 81.0% 73.8%
3681526 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 52.0 5.51e-01 72.4% 86.0%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 61.0 5.38e-01 100.0% 60.7%
3632435 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 67.0 5.38e-01 100.0% 69.1%
3494629 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 54.0 5.68e-01 79.3% 96.0%
3834246 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 57.0 5.81e-01 86.2% 94.5%
3451260 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 55.0 5.51e-01 84.5% 86.7%
3425021 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 51.0 5.66e-01 75.9% 100.0%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 56.0 5.36e-01 89.7% 78.6%
3344585 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 62.0 6.06e-01 100.0% 98.5%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 49.0 4.61e-01 72.4% 60.0%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 52.0 4.32e-01 82.8% 46.4%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 59.0 5.30e-01 93.1% 93.8%
3182011 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 49.0 5.31e-01 74.1% 97.8%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 57.0 5.73e-01 93.1% 88.3%
3648014 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 49.0 4.57e-01 75.9% 64.0%
3408565 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 48.0 5.30e-01 72.4% 93.3%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 57.0 5.69e-01 93.1% 88.3%
3636704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 53.0 4.41e-01 89.7% 47.0%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 60.0 4.96e-01 98.3% 67.3%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 60.0 5.42e-01 98.3% 92.5%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 60.0 5.42e-01 98.3% 95.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 61.0 4.83e-01 100.0% 94.8%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 59.0 5.23e-01 98.3% 95.3%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 59.0 5.14e-01 98.3% 84.4%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 59.0 5.33e-01 98.3% 98.8%
3818741 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 54.0 5.43e-01 91.4% 90.0%
3669426 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 46.0 5.16e-01 75.9% 97.7%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 59.0 4.74e-01 100.0% 95.7%
3515309 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 58.0 3.51e-01 100.0% 32.1%
3552610 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 51.0 4.74e-01 84.5% 64.9%
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 57.0 4.80e-01 98.3% 80.0%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 57.0 4.74e-01 98.3% 75.2%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 56.0 5.02e-01 100.0% 75.3%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 56.0 5.22e-01 98.3% 96.0%
3201568 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 57.0 5.37e-01 98.3% 91.4%
None — 0.65 55.0 3.38e-01 100.0% 41.8%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 54.0 4.67e-01 98.3% 94.7%
3808903 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 55.0 3.32e-01 100.0% 33.2%
3803880 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.64 54.0 3.31e-01 96.6% 37.1%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 49.0 5.04e-01 93.1% 87.3%
3485475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 55.0 4.89e-01 98.3% 89.4%
4073598 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 55.0 5.36e-01 100.0% 89.2%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.63 54.0 3.27e-01 100.0% 36.2%
3430466 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 55.0 3.95e-01 100.0% 81.0%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 54.0 4.87e-01 98.3% 93.8%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 54.0 4.60e-01 100.0% 78.6%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 53.0 4.90e-01 98.3% 96.0%
None — 0.62 55.0 3.24e-01 100.0% 31.8%
3920713 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 53.0 3.20e-01 100.0% 29.6%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.59 52.0 3.10e-01 100.0% 28.9%
None — 0.58 51.0 3.15e-01 100.0% 40.6%
3437971 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.55 48.0 4.14e-01 98.3% 100.0%
D2 medium residues 210-287
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ii2A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.64 44.0 4.09e-01 71.8% 79.6%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 2.99e-01 100.0% 52.8%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.53 44.0 3.72e-01 100.0% 74.0%
1m9iA01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.51 36.0 3.61e-01 74.4% 95.0%
3crjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 36.0 2.86e-01 75.6% 81.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738608 109.4.1.75 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD 0.60 51.0 3.30e-01 100.0% 36.7%
3255234 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 4.26e-01 89.7% 87.8%
3461683 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 4.08e-01 98.7% 91.7%
3576126 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.55 38.0 3.36e-01 73.1% 96.8%
3541218 2004.1.1.589 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP, URGCP_GTPase 0.54 47.0 2.76e-01 100.0% 30.3%
D3 medium residues 288-363
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_590__YP_009430039__Pandoravirus_salinus__1349410__D308-364