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hypothetical_protein_pneo_cds_485

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_485__YP_009482095__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482095 ↗
Protein ID:
hypothetical_protein_pneo_cds_485
Kingdom:
euk

Quality

72.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-153
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_91__YP_009480775__Pandoravirus_macleodensis__2107707__D23-87
D2 medium residues 185-253
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_463__YP_009481147__Pandoravirus_macleodensis__2107707__D140-197
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 45.0 3.61e-01 71.0% 83.8%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.63 50.0 4.95e-01 98.6% 82.4%
7a0hA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.60 49.0 4.42e-01 95.7% 90.1%
6rloK01 1.10.1450.10 Mainly Alpha › Orthogonal Bundle › Cd81 Antigen, Extracellular Domain; Chain: A › Tetraspanin 0.59 39.0 3.86e-01 94.2% 64.0%
1o0sA02 1.20.1370.30 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.59 48.0 4.15e-01 100.0% 58.3%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 39.0 3.38e-01 72.5% 53.4%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.56 46.0 4.42e-01 94.2% 85.5%
2lo6A00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 48.0 3.69e-01 100.0% 47.4%
2qe9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 37.0 3.01e-01 81.2% 48.7%
1bbnA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 38.0 3.10e-01 81.2% 79.7%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 37.0 2.87e-01 81.2% 80.3%
1ezrA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.51 44.0 2.91e-01 100.0% 50.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3191430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 55.0 5.19e-01 100.0% 62.7%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 63.0 6.01e-01 100.0% 87.5%
3170098 109.4.1.1362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C 0.69 60.0 4.02e-01 100.0% 36.2%
3473623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 59.0 5.55e-01 100.0% 83.5%
3299128 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 58.0 5.24e-01 100.0% 72.0%
56712 150.3.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.67 49.0 4.13e-01 78.3% 80.0%
3694013 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 57.0 5.14e-01 100.0% 74.0%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 55.0 5.41e-01 100.0% 90.7%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 56.0 5.28e-01 100.0% 92.9%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 55.0 5.00e-01 100.0% 89.5%
3244680 145.1.1.2 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A 0.60 51.0 4.92e-01 100.0% 85.0%
3320550 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 3.60e-01 92.8% 48.8%
3595418 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 43.0 3.90e-01 82.6% 69.0%
3663193 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 43.0 2.62e-01 82.6% 23.5%
4149132 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.57 39.0 2.63e-01 72.5% 33.5%
3499690 576.1.1.1 ↗ few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin 0.56 38.0 3.63e-01 94.2% 60.0%
3189269 3184.1.1.1 ↗ alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge 0.55 40.0 3.78e-01 84.1% 63.9%
3917311 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.55 38.0 3.08e-01 72.5% 59.7%
4465787 150.3.1.7 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL4 0.52 38.0 3.31e-01 81.2% 92.5%
4281430 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 3.04e-01 100.0% 26.2%
3978474 191.1.1.17 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13 0.51 40.0 3.39e-01 85.5% 57.5%
3271959 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 45.0 4.06e-01 100.0% 84.2%
D3 medium residues 374-535
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1026__YP_009119995__Pandoravirus_inopinatum__1605721__D192-256_273-350