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hypothetical_protein_pneo_cds_508

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_508__YP_009482118__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482118 ↗
Protein ID:
hypothetical_protein_pneo_cds_508
Kingdom:
euk

Quality

78.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-175
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_912__YP_009483603__Pandoravirus_quercus__2107709__D38-182
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 53.0 4.99e-01 89.6% 96.3%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 53.0 4.77e-01 90.3% 71.4%
1qymA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 52.0 4.37e-01 88.8% 80.7%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 47.0 4.08e-01 91.8% 71.2%
5g05P02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 49.0 4.31e-01 100.0% 70.6%
6i57A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.64e-01 91.8% 96.8%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 3.74e-01 100.0% 60.7%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 36.0 3.84e-01 71.6% 82.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253180 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.71 63.0 5.30e-01 94.0% 77.2%
3682278 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 4.67e-01 90.3% 71.9%
3363711 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.57 45.0 4.47e-01 89.6% 80.0%
3679151 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 44.0 4.34e-01 87.3% 92.9%
3458250 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 44.0 4.35e-01 87.3% 87.9%
3829638 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 43.0 4.33e-01 87.3% 89.3%
3808572 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.54 42.0 4.26e-01 87.3% 83.8%
3606125 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 47.0 3.47e-01 99.3% 46.5%
3460895 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 42.0 4.29e-01 87.3% 91.1%
3819433 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 44.0 4.07e-01 94.8% 70.9%
3828676 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.52 39.0 4.25e-01 86.6% 100.0%
3437190 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 40.0 3.85e-01 85.8% 72.0%
3421847 109.4.1.1308 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 0.52 46.0 3.67e-01 99.3% 63.6%
3361779 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 45.0 4.02e-01 100.0% 70.2%
3316394 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.51 42.0 3.91e-01 90.3% 71.2%
D2 medium residues 456-517
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pntB00 1.25.40.520 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 3.69e-01 100.0% 83.7%
4ei7A02 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.55 46.0 3.22e-01 100.0% 39.3%
4gw3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.02e-01 100.0% 79.2%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.53 36.0 3.53e-01 74.2% 100.0%
3bh0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.92e-01 100.0% 68.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3254402 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 49.0 3.94e-01 95.2% 47.4%
3679646 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 36.0 2.89e-01 75.8% 54.1%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.50 34.0 3.57e-01 72.6% 98.2%