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hypothetical_protein_pneo_cds_527
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_527__YP_009482137__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482137 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_527
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-168
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 31.0 | 3.26e-01 | 85.4% | 50.9% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.61 | 33.0 | 3.87e-01 | 86.2% | 75.0% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.56 | 40.0 | 3.67e-01 | 94.3% | 57.3% |
| 3k9vA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 39.0 | 2.66e-01 | 72.4% | 22.6% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 39.0 | 3.80e-01 | 78.0% | 97.1% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 36.0 | 3.63e-01 | 87.8% | 72.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4441546 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.69 | 39.0 | 4.31e-01 | 91.1% | 68.0% |
| 5033276 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.59 | 48.0 | 4.51e-01 | 87.0% | 84.8% |
| 3859555 | 601.19.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein | 0.56 | 39.0 | 3.41e-01 | 95.1% | 48.3% |
| 3817490 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 4.49e-01 | 95.9% | 96.2% |
| 3422310 | 150.1.1.87 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Erg28 | 0.53 | 37.0 | 3.65e-01 | 89.4% | 66.4% |
| 5010597 | 5058.1.1.99 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF373 | 0.52 | 37.0 | 3.57e-01 | 74.0% | 90.7% |
| 3823956 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 46.0 | 4.23e-01 | 99.2% | 76.1% |
| 3452886 | 145.1.1.60 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Beta-prop_KIB1-4 | 0.50 | 39.0 | 3.66e-01 | 80.5% | 94.7% |
D2
medium
residues 169-296