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hypothetical_protein_pneo_cds_55

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_55__YP_009481665__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481665 ↗
Protein ID:
hypothetical_protein_pneo_cds_55
Kingdom:
euk

Quality

70.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-72
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 61.0 6.72e-01 73.5% 94.7%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.81 58.0 4.13e-01 77.6% 29.2%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.74 63.0 4.95e-01 100.0% 70.0%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.73 63.0 5.14e-01 98.0% 86.8%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 58.0 3.61e-01 93.9% 19.8%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.69 58.0 4.87e-01 100.0% 85.9%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.69 49.0 4.14e-01 77.6% 49.4%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.69 54.0 4.24e-01 89.8% 49.5%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.69 54.0 3.69e-01 89.8% 29.6%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.68 59.0 5.20e-01 100.0% 90.4%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.68 49.0 4.18e-01 79.6% 80.0%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.67 47.0 4.02e-01 73.5% 51.3%
2ixoA02 1.20.120.1150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain 0.67 50.0 3.84e-01 81.6% 83.3%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.67 51.0 3.74e-01 83.7% 60.4%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 46.0 3.95e-01 77.6% 71.1%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 57.0 4.04e-01 98.0% 54.6%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 45.0 4.21e-01 75.5% 80.9%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 54.0 4.00e-01 98.0% 61.8%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 44.0 3.23e-01 75.5% 24.8%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 43.0 4.02e-01 95.9% 57.4%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 52.0 3.79e-01 98.0% 63.6%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 53.0 4.24e-01 100.0% 87.4%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 50.0 3.75e-01 98.0% 79.9%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 42.0 3.60e-01 77.6% 89.5%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 47.0 3.65e-01 87.8% 95.4%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 46.0 3.91e-01 95.9% 54.5%
4gr2A00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.58 47.0 3.77e-01 98.0% 44.5%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 46.0 4.05e-01 100.0% 89.2%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.57 50.0 3.89e-01 100.0% 60.2%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.56 48.0 3.24e-01 100.0% 93.4%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.55 40.0 3.45e-01 83.7% 96.6%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 2.90e-01 100.0% 49.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 68.0 7.45e-01 75.5% 90.0%
3447860 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.88 60.0 6.26e-01 71.4% 77.8%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.88 70.0 4.20e-01 89.8% 14.7%
3315130 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 61.0 6.65e-01 75.5% 90.0%
3698443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 59.0 5.87e-01 71.4% 70.0%
3418207 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.86 58.0 6.54e-01 73.5% 100.0%
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 60.0 4.94e-01 75.5% 42.4%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 67.0 5.88e-01 89.8% 58.6%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 70.0 5.32e-01 91.8% 40.9%
3693224 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 61.0 6.56e-01 81.6% 92.5%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 65.0 6.54e-01 81.6% 80.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 64.0 6.63e-01 83.7% 86.7%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 5.68e-01 91.8% 52.2%
3837757 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 60.0 5.18e-01 79.6% 49.3%
3665986 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 58.0 5.98e-01 71.4% 77.8%
3430286 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 67.0 6.45e-01 85.7% 78.2%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 59.0 5.77e-01 77.6% 69.8%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 6.01e-01 100.0% 86.0%
3433340 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 75.0 5.95e-01 100.0% 83.9%
3679680 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 5.57e-01 100.0% 86.1%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 58.0 5.70e-01 77.6% 69.8%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.82 73.0 4.18e-01 100.0% 34.4%
3658277 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 67.0 6.27e-01 89.8% 76.7%
3433159 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 58.0 6.29e-01 77.6% 92.5%
3643788 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 63.0 6.12e-01 83.7% 76.4%
3381011 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 72.0 5.33e-01 100.0% 87.9%
3467883 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 58.0 5.38e-01 75.5% 61.7%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 63.0 3.94e-01 83.7% 17.1%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 66.0 6.38e-01 95.9% 80.0%
3347793 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 6.09e-01 100.0% 94.7%
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 60.0 6.05e-01 83.7% 80.0%
3667444 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 70.0 6.78e-01 95.9% 98.1%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 5.92e-01 98.0% 60.0%
3189958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 58.0 6.06e-01 83.7% 86.7%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 61.0 6.31e-01 81.6% 88.9%
3185810 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 56.0 6.10e-01 75.5% 97.5%
3650217 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 71.0 6.17e-01 100.0% 90.5%
3321664 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 70.0 4.04e-01 100.0% 30.5%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 60.0 6.27e-01 89.8% 91.1%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 68.0 5.57e-01 100.0% 53.3%
3434120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 53.0 5.76e-01 71.4% 89.7%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 69.0 6.26e-01 98.0% 93.8%
3422636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 62.0 6.39e-01 87.8% 100.0%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.22e-01 98.0% 45.7%
3632792 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 65.0 6.50e-01 95.9% 96.0%
3739768 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 5.54e-01 100.0% 65.9%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 59.0 5.21e-01 87.8% 57.3%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 66.0 5.48e-01 98.0% 58.8%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 55.0 5.74e-01 81.6% 86.7%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 58.0 5.29e-01 87.8% 64.6%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 56.0 5.59e-01 81.6% 82.0%
3438464 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.67 47.0 4.67e-01 73.5% 74.0%
3813850 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.67 55.0 4.10e-01 98.0% 76.4%
3633421 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 58.0 3.32e-01 98.0% 29.8%
3277587 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 54.0 4.29e-01 100.0% 67.8%
3785481 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.63 53.0 4.26e-01 100.0% 94.3%
3315665 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.63 50.0 3.82e-01 100.0% 38.6%
3666961 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.63 54.0 3.98e-01 98.0% 63.1%
3579129 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 51.0 3.38e-01 98.0% 39.1%
3598908 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.59 45.0 4.36e-01 91.8% 98.3%
3938192 633.22.1.0 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.59 50.0 3.53e-01 98.0% 55.6%
4962504 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.59 41.0 3.68e-01 77.6% 52.0%
D2 medium residues 74-199
PDB
D3 medium residues 223-341
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_52__YP_009480736__Pandoravirus_macleodensis__2107707__D256-341