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hypothetical_protein_pneo_cds_563

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_563__YP_009482173__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482173 ↗
Protein ID:
hypothetical_protein_pneo_cds_563
Kingdom:
euk

Quality

78.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 186-243_257-314
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_368__YP_009481052__Pandoravirus_macleodensis__2107707__D187-244_260-316
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 27.0 3.69e-01 72.4% 71.2%
6fbtA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.62 40.0 4.77e-01 92.2% 100.0%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 44.0 4.08e-01 100.0% 56.9%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 48.0 4.16e-01 95.7% 53.3%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.61 55.0 4.12e-01 100.0% 71.5%
3sl9B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 50.0 4.49e-01 100.0% 63.6%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 49.0 4.73e-01 97.4% 76.7%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 38.0 3.89e-01 100.0% 66.1%
5gxxA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 52.0 3.51e-01 95.7% 29.6%
3l9tA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.59 46.0 4.63e-01 96.6% 82.2%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 46.0 4.64e-01 100.0% 83.2%
4ozvA00 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.59 51.0 3.75e-01 97.4% 48.0%
2vgxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 44.0 4.11e-01 100.0% 62.8%
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 3.02e-01 100.0% 13.4%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.58 47.0 4.83e-01 99.1% 92.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 35.0 4.26e-01 99.1% 93.3%
4gyoA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 45.0 3.74e-01 98.3% 45.0%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 43.0 4.23e-01 94.8% 71.4%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 39.0 3.88e-01 100.0% 66.4%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.58 44.0 3.99e-01 81.9% 89.6%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 51.0 4.50e-01 99.1% 67.1%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 47.0 3.40e-01 90.5% 31.2%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 4.70e-01 100.0% 80.7%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 4.11e-01 96.6% 59.9%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 50.0 5.02e-01 99.1% 96.6%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.56 43.0 4.34e-01 81.0% 91.2%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 42.0 3.77e-01 86.2% 55.4%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 46.0 3.99e-01 95.7% 55.7%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 44.0 4.22e-01 99.1% 72.7%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.55 47.0 4.51e-01 94.0% 89.6%
8amzS01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 3.14e-01 88.8% 53.2%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 35.0 3.84e-01 99.1% 79.6%
3ceqA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 44.0 3.48e-01 97.4% 40.8%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 36.0 3.73e-01 87.1% 72.6%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.54 48.0 4.92e-01 99.1% 99.1%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 3.92e-01 96.6% 62.6%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 48.0 4.36e-01 100.0% 72.4%
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 3.69e-01 100.0% 49.3%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.43e-01 96.6% 36.1%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.54 38.0 3.88e-01 100.0% 73.5%
3rjvA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 38.0 3.62e-01 96.6% 60.4%
2ondA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 42.0 3.22e-01 94.0% 33.8%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 47.0 4.32e-01 100.0% 87.0%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 34.0 3.51e-01 100.0% 68.4%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.51 40.0 3.42e-01 100.0% 51.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399981 109.4.1.1666 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 0.65 48.0 4.42e-01 99.1% 60.0%
3448231 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 4.40e-01 96.6% 57.5%
3368681 109.4.1.935 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.65 58.0 4.13e-01 99.1% 44.9%
3335296 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.65 48.0 5.10e-01 95.7% 90.0%
3501738 109.6.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF 0.64 57.0 4.99e-01 96.6% 68.8%
3914885 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.64 49.0 3.22e-01 96.6% 18.1%
3754394 109.4.1.2407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_8, TPR_11 0.64 49.0 3.16e-01 96.6% 16.8%
3503488 109.4.1.1352 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM, EFR3 0.63 54.0 3.99e-01 95.7% 42.2%
3632112 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 49.0 5.15e-01 81.9% 93.3%
4874432 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 51.0 4.93e-01 94.0% 79.8%
3712352 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.62 47.0 3.93e-01 96.6% 46.5%
3876902 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 4.51e-01 100.0% 60.0%
3288426 109.37.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Anion channel SLAC1-related › Anion channel SLAC1-related › SLAC1 0.61 56.0 4.14e-01 100.0% 47.8%
3820279 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.61 51.0 3.81e-01 91.4% 36.5%
3389856 109.6.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.61 54.0 3.98e-01 100.0% 65.7%
3356319 109.4.1.1741 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_At1g68980 0.61 50.0 3.98e-01 100.0% 43.3%
4320629 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.61 55.0 3.69e-01 100.0% 27.0%
3714222 109.4.1.759 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin 0.61 54.0 3.45e-01 100.0% 93.7%
5039743 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.59 28.0 2.52e-01 77.6% 30.9%
3398720 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.59 43.0 3.13e-01 100.0% 26.5%
3197184 109.4.1.120 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.59 52.0 4.02e-01 100.0% 55.6%
3485595 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 3.55e-01 100.0% 39.6%
3361198 109.3.1.188 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.59 50.0 4.46e-01 94.0% 93.3%
3990257 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 5.08e-01 96.6% 95.0%
3445275 109.4.1.1641 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long 0.59 46.0 3.42e-01 89.7% 31.8%
3440101 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.16e-01 100.0% 16.8%
3920065 109.4.1.120 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.58 51.0 4.10e-01 100.0% 56.7%
3320963 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 45.0 4.03e-01 96.6% 57.1%
3624860 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.58 43.0 3.86e-01 100.0% 54.7%
3790515 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.58 44.0 3.92e-01 100.0% 55.9%
3548653 109.4.1.1306 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.57 41.0 3.81e-01 96.6% 57.3%
3644352 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 4.38e-01 98.3% 77.6%
3614423 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.57 50.0 3.18e-01 98.3% 21.0%
5019590 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 3.96e-01 99.1% 46.2%
3797502 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 3.26e-01 100.0% 23.2%
3295589 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 41.0 4.32e-01 94.0% 87.6%
3699487 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 48.0 3.81e-01 98.3% 54.1%
3399200 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 3.50e-01 100.0% 43.6%
3976441 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.55 38.0 3.75e-01 99.1% 66.4%
4782660 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 50.0 4.48e-01 100.0% 72.5%
3311460 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 3.89e-01 87.9% 61.3%
3613749 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 47.0 4.11e-01 95.7% 90.3%
3701078 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 40.0 3.88e-01 100.0% 68.1%
3404169 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.54 40.0 3.21e-01 100.0% 41.4%
3706364 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 48.0 4.28e-01 98.3% 88.1%
5053742 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.53 36.0 3.64e-01 100.0% 68.3%
3955160 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 3.96e-01 100.0% 83.2%
3665357 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.51 39.0 3.16e-01 94.8% 39.2%
3771613 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 38.0 3.37e-01 99.1% 51.7%