←Back to structures

hypothetical_protein_pneo_cds_623

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_623__YP_009482233__Pandoravirus_neocaledonia__2107708

Identity

Accession:: YP_009482233 ↗
Protein ID:: hypothetical_protein_pneo_cds_623
Kingdom:: euk

Quality

58.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 290-416

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cmyA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	45.0	4.41e-01	81.1%	97.2%
1juqC00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	52.0	4.92e-01	95.3%	91.3%
1paqA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	51.0	4.75e-01	96.1%	91.9%
3ut4A00	1.25.40.750	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071	0.58	48.0	4.79e-01	100.0%	88.3%
3bwtA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.57	49.0	3.61e-01	93.7%	35.4%
5bz1A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.56	49.0	3.61e-01	99.2%	51.5%
5fzsA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	38.0	4.07e-01	81.9%	86.9%
7qihA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	39.0	4.24e-01	87.4%	95.0%
2vsyA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	41.0	4.03e-01	100.0%	74.6%
2mhkA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	38.0	3.89e-01	75.6%	96.0%
6fdpA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	42.0	4.34e-01	93.7%	92.5%
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	46.0	4.13e-01	99.2%	80.7%
1xnfA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	45.0	3.68e-01	100.0%	58.7%
6i57A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	41.0	4.20e-01	93.7%	89.6%
2i2xB01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.51	35.0	3.91e-01	78.7%	91.0%
2xevB00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	43.0	4.36e-01	93.7%	98.4%
6hftA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	41.0	4.19e-01	94.5%	90.6%
4g1tA03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	44.0	3.66e-01	100.0%	77.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3484295	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.72	59.0	4.53e-01	100.0%	40.0%
3260807	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.70	64.0	5.00e-01	100.0%	56.1%
3480260	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.69	56.0	4.93e-01	99.2%	59.5%
3273246	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.64	55.0	4.82e-01	100.0%	62.6%
3727984	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.60	55.0	4.31e-01	100.0%	50.8%
3584776	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	50.0	4.77e-01	91.3%	86.7%
3700888	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	50.0	3.94e-01	92.1%	51.1%
3367879	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.59	50.0	4.18e-01	100.0%	52.4%
3892958	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	49.0	4.63e-01	96.1%	74.2%
4349221	109.3.1.166 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3	0.59	54.0	4.42e-01	99.2%	61.8%
3582201	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	49.0	4.02e-01	94.5%	71.8%
3574000	109.4.1.70 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID	0.58	51.0	4.77e-01	99.2%	96.2%
3274043	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	51.0	4.31e-01	100.0%	63.2%
3671771	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.55	45.0	4.67e-01	92.9%	98.3%
3209988	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.54	47.0	4.56e-01	100.0%	86.2%
3743630	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.54	47.0	4.51e-01	100.0%	86.2%
3683071	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	39.0	3.16e-01	78.7%	50.4%

D2 medium residues 33-166

PDB

Domain cluster: rep: F-box_domain_protein__YP_009120021__Pandoravirus_inopinatum__1605721__D14-160

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ymrC00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.50	43.0	2.76e-01	98.5%	77.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4048066	109.4.1.471 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC	0.55	40.0	3.38e-01	74.6%	70.5%