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hypothetical_protein_pneo_cds_633

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_633__YP_009482243__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482243 ↗
Protein ID:
hypothetical_protein_pneo_cds_633
Kingdom:
euk

Quality

75.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-116
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.77 70.0 5.70e-01 100.0% 69.5%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.71 62.0 5.52e-01 96.2% 80.9%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 52.0 4.87e-01 79.5% 77.7%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 48.0 4.36e-01 76.9% 71.6%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 4.35e-01 93.6% 55.9%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 47.0 4.12e-01 78.2% 68.6%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 48.0 4.47e-01 80.8% 83.7%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 45.0 4.19e-01 74.4% 69.0%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 47.0 4.23e-01 80.8% 78.5%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 45.0 4.16e-01 82.1% 84.9%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 4.42e-01 82.1% 95.3%
2ou3A01 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.58 50.0 4.09e-01 100.0% 64.3%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 46.0 3.73e-01 89.7% 63.3%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 43.0 3.88e-01 82.1% 71.7%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.57 42.0 3.61e-01 80.8% 91.2%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 35.0 3.62e-01 76.9% 66.7%
3qhaB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 43.0 3.82e-01 83.3% 86.6%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.56 43.0 3.80e-01 82.1% 77.6%
2oayA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.56 42.0 3.16e-01 79.5% 48.4%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 43.0 3.60e-01 83.3% 67.7%
3rfyA02 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.55 40.0 3.67e-01 79.5% 84.1%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.54 39.0 4.13e-01 82.1% 84.3%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.54 48.0 4.34e-01 100.0% 87.0%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 40.0 3.91e-01 82.1% 77.6%
1ulqA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 40.0 3.12e-01 100.0% 36.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.53 39.0 3.87e-01 82.1% 78.8%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.53 41.0 3.62e-01 91.0% 82.3%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.51 33.0 3.12e-01 74.4% 49.1%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 36.0 2.93e-01 75.6% 67.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291574 192.29.1.248 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF27150 0.64 48.0 4.14e-01 80.8% 76.0%
4402843 604.1.1.20 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.63 46.0 4.08e-01 78.2% 79.1%
3685707 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 49.0 3.56e-01 88.5% 44.3%
3378097 604.1.1.110 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N 0.62 45.0 3.94e-01 78.2% 77.5%
4526671 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.60 44.0 3.13e-01 79.5% 45.6%
3216453 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.60 44.0 3.42e-01 80.8% 63.7%
3571279 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.59 50.0 4.17e-01 97.4% 71.0%
5000552 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 49.0 4.54e-01 92.3% 76.0%
3230643 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.58 43.0 3.39e-01 80.8% 65.0%
5035480 159.1.2.4 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like 0.58 44.0 3.98e-01 82.1% 77.3%
3488292 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 43.0 3.91e-01 80.8% 81.8%
4977057 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.57 43.0 3.82e-01 79.5% 80.9%
4586684 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 41.0 3.52e-01 78.2% 63.1%
3943738 5069.1.1.3 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I 0.54 40.0 3.19e-01 80.8% 58.3%
3934374 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.50 36.0 2.95e-01 79.5% 38.7%