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hypothetical_protein_pneo_cds_65

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_65__YP_009481675__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481675 ↗
Protein ID:
hypothetical_protein_pneo_cds_65
Kingdom:
euk

Quality

66.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-191
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ppiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.71 39.0 4.79e-01 77.5% 84.3%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 24.0 3.59e-01 71.7% 100.0%
4iilA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 28.0 3.10e-01 78.0% 65.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393702 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.73 38.0 4.61e-01 85.5% 75.7%
3454541 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.72 47.0 5.40e-01 79.8% 87.7%
3392657 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.71 39.0 4.55e-01 87.3% 73.4%
3444838 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.70 45.0 5.31e-01 79.8% 91.7%
3378713 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.69 56.0 5.87e-01 91.3% 94.8%
3400267 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.69 39.0 4.22e-01 71.7% 64.0%
3717226 226.1.1.6 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › SANBR_BTB 0.65 51.0 5.09e-01 92.5% 80.6%
3594463 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.65 51.0 4.88e-01 92.5% 70.2%
3789708 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.65 41.0 4.52e-01 81.5% 79.3%
3593577 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.62 39.0 4.77e-01 89.0% 98.2%
None — 0.62 48.0 4.95e-01 93.1% 87.5%
4093650 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 48.0 4.79e-01 93.6% 82.3%
3257570 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 49.0 4.67e-01 93.1% 75.0%
3781661 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 39.0 4.35e-01 75.7% 85.4%
4011952 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.60 36.0 4.24e-01 71.1% 85.8%
3419604 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.59 46.0 4.70e-01 93.6% 83.5%
3618613 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 45.0 4.54e-01 79.8% 79.4%
3508021 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 42.0 4.03e-01 92.5% 65.9%
3667428 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 46.0 4.41e-01 93.6% 76.5%
3616362 109.46.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH 0.54 35.0 3.83e-01 96.0% 79.3%
D2 high residues 599-750
PDB
D3 medium residues 437-487
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 42.0 3.12e-01 74.5% 57.8%
4e3zB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 44.0 2.87e-01 78.4% 18.4%
2o55A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.61 50.0 3.29e-01 100.0% 33.5%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 44.0 3.63e-01 78.4% 80.2%
8dqaA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.58 41.0 3.36e-01 74.5% 100.0%
3crvA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.18e-01 92.2% 24.4%
3i6iA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 3.08e-01 88.2% 91.9%
3majA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 2.78e-01 86.3% 33.4%
5gizA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 41.0 3.12e-01 80.4% 49.6%
1wn1A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.55 43.0 3.34e-01 92.2% 83.7%
3ngxA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 2.98e-01 76.5% 41.6%
3kfvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.33e-01 98.0% 35.5%
1np7B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 37.0 2.82e-01 76.5% 75.2%
1x7oA01 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.53 41.0 3.35e-01 94.1% 44.4%
2x5oA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 39.0 3.31e-01 82.4% 47.8%
2pfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.52 38.0 2.45e-01 74.5% 78.1%
4qclA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 2.60e-01 90.2% 31.0%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.17e-01 90.2% 60.5%
3s3tA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 37.0 2.81e-01 84.3% 51.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2756449 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.62 43.0 2.93e-01 74.5% 31.4%
3516781 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.59 41.0 3.07e-01 74.5% 36.2%
4994646 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 45.0 3.29e-01 82.4% 90.8%
4968004 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.58 40.0 2.91e-01 76.5% 77.7%
5041365 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.58 44.0 3.23e-01 100.0% 29.0%
None — 0.57 43.0 3.51e-01 82.4% 47.4%
4632712 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.56 40.0 2.71e-01 76.5% 36.6%
4011439 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.56 39.0 2.55e-01 74.5% 16.9%
3929327 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 3.29e-01 98.0% 76.5%
3705180 2003.1.1.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog 0.56 45.0 3.04e-01 90.2% 89.8%
5056334 7574.1.1.8 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Transket_pyr 0.55 43.0 3.09e-01 92.2% 42.4%
3469356 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 39.0 2.76e-01 80.4% 42.4%
4946525 2006.1.5.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.52 41.0 2.74e-01 100.0% 49.0%
3946607 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.52 40.0 3.04e-01 92.2% 66.9%
4020151 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.51 35.0 2.96e-01 74.5% 71.0%