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hypothetical_protein_pneo_cds_664
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_664__YP_009482274__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482274 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_664
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-74
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.74 | 50.0 | 3.40e-01 | 100.0% | 19.8% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.71 | 45.0 | 4.44e-01 | 100.0% | 59.6% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.68 | 45.0 | 3.61e-01 | 100.0% | 34.3% |
| 8h4pA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 57.0 | 3.61e-01 | 100.0% | 18.2% |
| 3zgzA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.65 | 48.0 | 3.28e-01 | 100.0% | 23.7% |
| 3kb9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 52.0 | 3.26e-01 | 100.0% | 21.8% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.62 | 50.0 | 3.53e-01 | 100.0% | 29.2% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.62 | 41.0 | 4.01e-01 | 84.9% | 62.1% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 55.0 | 3.96e-01 | 100.0% | 92.0% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 50.0 | 3.24e-01 | 100.0% | 22.9% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.60 | 45.0 | 4.02e-01 | 84.9% | 79.0% |
| 2f48A03 | 1.10.10.480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 | 0.60 | 46.0 | 4.20e-01 | 100.0% | 61.3% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.59 | 53.0 | 4.19e-01 | 100.0% | 50.0% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 41.0 | 3.15e-01 | 73.6% | 56.4% |
| 4gytA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.58 | 46.0 | 3.39e-01 | 98.1% | 42.4% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.58 | 40.0 | 3.96e-01 | 100.0% | 67.2% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.58 | 44.0 | 4.02e-01 | 83.0% | 95.8% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.57 | 51.0 | 3.00e-01 | 100.0% | 72.6% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 41.0 | 3.88e-01 | 98.1% | 64.6% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.56 | 44.0 | 4.06e-01 | 90.6% | 67.6% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 40.0 | 3.11e-01 | 84.9% | 47.6% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 41.0 | 3.93e-01 | 100.0% | 68.3% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.51 | 41.0 | 3.81e-01 | 88.7% | 87.9% |
| 3u61D03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.51 | 37.0 | 3.26e-01 | 84.9% | 95.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512862 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.73 | 61.0 | 4.01e-01 | 98.1% | 51.5% |
| 3089010 | 141.1.1.5 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › TRI5 | 0.67 | 58.0 | 3.59e-01 | 100.0% | 16.9% |
| 3592140 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.67 | 58.0 | 4.34e-01 | 100.0% | 92.6% |
| 5011341 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.64 | 51.0 | 4.90e-01 | 86.8% | 98.3% |
| 3722472 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.62 | 41.0 | 2.87e-01 | 84.9% | 22.5% |
| 4182099 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.62 | 46.0 | 4.71e-01 | 83.0% | 94.0% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 45.0 | 4.23e-01 | 81.1% | 90.8% |
| 4423693 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.59 | 48.0 | 4.76e-01 | 88.7% | 90.9% |
| 3569684 | 108.1.1.95 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › CCD48 | 0.58 | 51.0 | 4.20e-01 | 98.1% | 62.1% |
| 5051840 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.56 | 42.0 | 3.59e-01 | 81.1% | 70.6% |
| 4942625 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.53 | 47.0 | 4.09e-01 | 100.0% | 93.8% |
D2
medium
residues 75-126
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.77 | 50.0 | 3.85e-01 | 73.1% | 32.1% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 53.0 | 5.37e-01 | 75.0% | 78.4% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.73 | 53.0 | 5.24e-01 | 80.8% | 74.5% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 54.0 | 5.47e-01 | 82.7% | 84.3% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.67 | 55.0 | 4.86e-01 | 90.4% | 80.3% |
| 3kheA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.63 | 49.0 | 3.87e-01 | 90.4% | 41.1% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 40.0 | 3.89e-01 | 90.4% | 55.7% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 47.0 | 4.51e-01 | 92.3% | 76.7% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 44.0 | 3.63e-01 | 86.5% | 93.1% |
| 7z0sF01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 2.87e-01 | 76.9% | 76.4% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 46.0 | 4.69e-01 | 98.1% | 94.2% |
| 3pfyA02 | 6.10.20.180 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.52 | 37.0 | 3.69e-01 | 80.8% | 96.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.73 | 55.0 | 5.09e-01 | 80.8% | 65.2% |
| 4093848 | 3584.1.1.1 ↗ | alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger | 0.71 | 62.0 | 4.09e-01 | 98.1% | 24.3% |
| 2770010 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.70 | 50.0 | 3.65e-01 | 90.4% | 26.8% |
| 3704805 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 49.0 | 5.15e-01 | 88.5% | 93.3% |
| 3587609 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.64 | 42.0 | 4.27e-01 | 88.5% | 70.0% |
| 3204020 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.63 | 45.0 | 4.71e-01 | 86.5% | 83.3% |
| 3517113 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.62 | 45.0 | 4.78e-01 | 86.5% | 91.1% |
| 3222137 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.60 | 45.0 | 4.48e-01 | 84.6% | 76.4% |
| 3550319 | 103.1.1.91 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28552 | 0.59 | 49.0 | 4.99e-01 | 98.1% | 98.0% |
| 3801470 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.59 | 46.0 | 4.70e-01 | 86.5% | 94.0% |
| 3623078 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 45.0 | 4.63e-01 | 86.5% | 94.0% |
| 3999068 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.57 | 44.0 | 4.36e-01 | 90.4% | 80.0% |
| 4490512 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 46.0 | 4.36e-01 | 100.0% | 78.5% |
| 3832034 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 42.0 | 4.11e-01 | 88.5% | 78.3% |
| 3432373 | 3238.1.1.1 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF | 0.51 | 40.0 | 2.47e-01 | 90.4% | 29.1% |