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hypothetical_protein_pneo_cds_682
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_682__YP_009482292__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482292 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_682
- Kingdom:
- euk
Quality
62.1
mean pLDDT
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 151-176_201-319
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.58 | 45.0 | 4.00e-01 | 82.1% | 75.0% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.56 | 37.0 | 4.28e-01 | 84.8% | 97.0% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 39.0 | 4.17e-01 | 74.5% | 90.6% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 44.0 | 3.50e-01 | 88.3% | 91.8% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 3.50e-01 | 88.3% | 91.2% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 40.0 | 3.91e-01 | 80.7% | 77.6% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 40.0 | 4.04e-01 | 80.7% | 79.5% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.53 | 33.0 | 3.67e-01 | 84.8% | 77.8% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 41.0 | 3.49e-01 | 82.8% | 51.9% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.52 | 28.0 | 3.37e-01 | 76.6% | 79.1% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 3.71e-01 | 73.1% | 94.0% |
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 37.0 | 2.80e-01 | 73.1% | 92.6% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 38.0 | 3.54e-01 | 77.9% | 83.2% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 37.0 | 3.82e-01 | 75.9% | 79.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3231099 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 38.0 | 4.71e-01 | 77.2% | 100.0% |
| 3096198 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.62 | 38.0 | 4.39e-01 | 70.3% | 83.3% |
| 4965152 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.61 | 41.0 | 4.34e-01 | 76.6% | 76.0% |
| 4950072 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.60 | 41.0 | 4.45e-01 | 74.5% | 81.6% |
| 3479226 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.60 | 41.0 | 4.70e-01 | 80.0% | 100.0% |
| 4886494 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 34.0 | 3.91e-01 | 86.9% | 78.0% |
| 5074212 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.58 | 39.0 | 4.41e-01 | 72.4% | 90.0% |
| 3255116 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.58 | 44.0 | 3.38e-01 | 78.6% | 67.8% |
| 4266402 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.58 | 40.0 | 4.26e-01 | 75.9% | 81.6% |
| 3739953 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.57 | 44.0 | 4.33e-01 | 84.8% | 75.5% |
| 4355722 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 36.0 | 4.29e-01 | 80.0% | 95.8% |
| 3273903 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.57 | 45.0 | 3.41e-01 | 82.1% | 70.3% |
| 3403847 | 9.1.1.47 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 | 0.57 | 30.0 | 3.64e-01 | 83.4% | 80.0% |
| 3456551 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.56 | 49.0 | 4.06e-01 | 94.5% | 94.5% |
| 5072339 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.55 | 30.0 | 3.92e-01 | 71.7% | 96.2% |
| 3282130 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.55 | 39.0 | 4.02e-01 | 75.2% | 76.3% |
| 4295817 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 31.0 | 3.24e-01 | 84.1% | 62.3% |
| 4346250 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 41.0 | 4.25e-01 | 85.5% | 99.3% |
| 3913260 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.51 | 40.0 | 3.65e-01 | 86.2% | 63.2% |
| 4000544 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 39.0 | 3.75e-01 | 81.4% | 97.0% |
D2
medium
residues 323-423
Domain cluster:
rep: hypothetical_protein_pneo_cds_683__YP_009482293__Pandoravirus_neocaledonia__2107708__D250-332
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19072.6 best | DUF5768 | 38.8 | 9.00e-10 | 80.2% | 46.3% |
D3
medium
residues 457-526
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 47.0 | 3.57e-01 | 97.1% | 98.3% |
| 5y58A01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.52 | 43.0 | 3.16e-01 | 100.0% | 52.5% |
| 6nyyE01 | 1.20.58.760 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 | 0.52 | 43.0 | 3.36e-01 | 98.6% | 84.4% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 45.0 | 3.40e-01 | 100.0% | 63.6% |
| 6pw7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 41.0 | 4.09e-01 | 88.6% | 100.0% |
D4
medium
residues 527-621_644-738