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hypothetical_protein_pneo_cds_69

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_69__YP_009481679__Pandoravirus_neocaledonia__2107708

Identity

Accession:: YP_009481679 ↗
Protein ID:: hypothetical_protein_pneo_cds_69
Kingdom:: euk

Quality

70.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 412-569

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sxjE03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.60	33.0	4.11e-01	74.7%	87.6%
4ffbC00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	44.0	3.91e-01	100.0%	52.8%
4iv6B01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.58	35.0	3.99e-01	77.8%	80.2%
4c9bB00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	44.0	3.72e-01	82.3%	67.1%
1rx0C01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.56	33.0	3.71e-01	74.1%	74.0%
1xnfA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	36.0	3.08e-01	73.4%	39.0%
5nnpE01	1.25.40.1040	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	37.0	2.65e-01	72.2%	21.6%
1hxiA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	33.0	3.75e-01	96.8%	79.5%
2wy4A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	32.0	3.44e-01	77.8%	66.9%
4m9aA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.53	32.0	3.58e-01	76.6%	77.3%
2ff4A02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	41.0	3.93e-01	100.0%	70.9%
3swhA01	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.53	43.0	4.31e-01	90.5%	84.2%
4gpkF02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	37.0	3.25e-01	100.0%	47.5%
1elrA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	32.0	3.47e-01	97.5%	72.7%
7ccmB01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.51	30.0	3.16e-01	75.9%	62.2%
3mvuA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.51	36.0	3.28e-01	72.2%	74.1%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3993061	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	44.0	4.15e-01	100.0%	59.0%
5071108	1188.1.1.1 ↗	alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip	0.60	44.0	3.75e-01	75.9%	75.3%
3392306	109.4.1.14 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4	0.59	44.0	4.07e-01	100.0%	61.5%
3421290	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	40.0	3.78e-01	95.6%	61.1%
5002997	1075.5.1.8 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3	0.56	42.0	3.55e-01	78.5%	65.2%
3719682	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.54	37.0	4.22e-01	94.9%	93.3%
4544657	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	45.0	4.38e-01	100.0%	83.5%
3998922	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.53	48.0	3.82e-01	100.0%	67.8%
4972598	604.39.1.0 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters	0.53	39.0	3.85e-01	77.2%	88.8%
3727979	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	3.40e-01	72.8%	54.5%
3611220	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	37.0	3.74e-01	96.2%	72.9%
3194445	138.1.1.2 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C	0.52	31.0	3.68e-01	77.2%	88.5%
3481053	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.51	39.0	3.31e-01	80.4%	83.4%
3353383	109.4.1.32 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G	0.50	44.0	4.11e-01	97.5%	75.0%

D2 medium residues 15-91

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	24.3	2.90e-05	61.0%	83.0%

D3 medium residues 110-191_204-278

PDB

Domain cluster: rep: hypothetical_protein_pmac_cds_64__YP_009480748__Pandoravirus_macleodensis__2107707__D94-184_200-249

D4 medium residues 348-411

PDB