←Back to structures

hypothetical_protein_pneo_cds_720

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_720__YP_009482330__Pandoravirus_neocaledonia__2107708

Identity

Accession:: YP_009482330 ↗
Protein ID:: hypothetical_protein_pneo_cds_720
Kingdom:: euk

Quality

70.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-102

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vkeB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.63	52.0	4.57e-01	100.0%	85.1%
5dikA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.61	51.0	4.36e-01	100.0%	74.1%
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.60	45.0	4.07e-01	85.2%	93.3%
1aqlA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.57	48.0	2.85e-01	100.0%	52.3%
4aidA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.56	38.0	3.51e-01	70.5%	86.6%
4ptsB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	43.0	3.29e-01	98.4%	62.7%
1zb1A00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.53	44.0	2.81e-01	100.0%	33.5%
1o98A02	3.40.720.10	Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A	0.52	40.0	2.69e-01	88.5%	23.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3264665	109.3.1.10 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4	0.76	68.0	5.15e-01	100.0%	60.0%
3312488	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.62	52.0	4.06e-01	98.4%	51.7%
3266825	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	49.0	3.41e-01	100.0%	42.4%
3289474	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.60	41.0	3.55e-01	70.5%	81.1%
4013083	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.59	50.0	4.09e-01	98.4%	88.3%
5048289	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.51	41.0	3.03e-01	95.1%	87.9%

D2 medium residues 295-390

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp0934__YP_009119903__Pandoravirus_inopinatum__1605721__D304-392

D3 medium residues 404-533

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5eidA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.71	62.0	6.38e-01	93.8%	96.7%
1ihbA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.68	61.0	5.70e-01	100.0%	80.8%
4crwA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	52.0	4.35e-01	96.9%	65.9%
7zcvA02	1.25.40.400	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	49.0	4.21e-01	94.6%	87.6%
4g26A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	49.0	3.83e-01	100.0%	84.3%
4neiA01	1.50.10.100	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase	0.54	48.0	3.62e-01	100.0%	50.4%
2hkuB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	39.0	3.54e-01	75.4%	83.8%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	35.0	3.64e-01	94.6%	73.9%
4f3vB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	45.0	3.64e-01	98.5%	57.7%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3272965	109.3.1.8 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2	0.79	60.0	6.56e-01	94.6%	97.1%
3259726	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.68	60.0	4.81e-01	96.2%	64.4%
3274155	109.3.1.8 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2	0.67	60.0	4.53e-01	98.5%	41.3%
3247851	109.3.1.33 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_3	0.66	60.0	5.56e-01	97.7%	85.0%
3198211	109.3.1.347 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_KRIT1	0.66	60.0	4.29e-01	98.5%	44.4%
3276191	109.3.1.171 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011	0.64	56.0	4.48e-01	95.4%	55.8%
3716850	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.64	57.0	4.33e-01	100.0%	80.3%
3259472	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.64	48.0	4.94e-01	97.7%	82.4%
3840773	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	56.0	5.33e-01	100.0%	92.0%
4836719	109.4.1.156 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central	0.60	52.0	3.98e-01	94.6%	60.9%
3604746	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	49.0	4.12e-01	89.2%	67.0%
3550059	109.4.1.1837 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BP28CT, U3snoRNP10	0.59	54.0	3.30e-01	100.0%	18.0%
3430382	109.4.1.1261 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long	0.58	52.0	4.17e-01	100.0%	62.6%
3322971	109.4.1.1262 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long	0.57	51.0	4.48e-01	100.0%	76.5%
3339436	109.4.1.1262 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long	0.57	48.0	4.80e-01	97.7%	90.4%
3644062	109.4.1.1280 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long	0.55	47.0	4.68e-01	100.0%	93.3%
3922083	601.4.1.74 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › EPS8_2nd	0.54	43.0	3.95e-01	86.9%	93.7%
3834205	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	44.0	4.13e-01	94.6%	97.6%

D4 medium residues 534-588

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hxiA02	1.25.40.420	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	46.0	4.22e-01	96.4%	78.8%
7plsA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.56	46.0	2.95e-01	100.0%	26.8%
3p7nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	37.0	3.44e-01	72.7%	68.1%
3l7wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	42.0	3.56e-01	96.4%	66.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3735849	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.82	73.0	4.68e-01	100.0%	28.2%
4349211	109.3.1.39 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_3	0.70	62.0	4.78e-01	100.0%	56.0%
3657259	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.63	52.0	4.09e-01	100.0%	45.9%

D5 medium residues 589-640

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp0849__YP_009119818__Pandoravirus_inopinatum__1605721__D707-757