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hypothetical_protein_pneo_cds_723
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_723__YP_009482333__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482333 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_723
- Kingdom:
- euk
Quality
71.1
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-120
D2
medium
residues 578-661
Domain cluster:
rep: F-box_incomplete_domain_containing_protein__YP_009482731__Pandoravirus_quercus__2107709__D462-550
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.73 | 50.0 | 5.27e-01 | 70.2% | 100.0% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.65 | 48.0 | 4.17e-01 | 78.6% | 78.9% |
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 47.0 | 3.67e-01 | 88.1% | 56.8% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.57 | 39.0 | 3.98e-01 | 70.2% | 75.9% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.56 | 45.0 | 3.78e-01 | 90.5% | 97.4% |
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 42.0 | 3.20e-01 | 86.9% | 62.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3798222 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 59.0 | 4.46e-01 | 95.2% | 61.0% |
| 4968638 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 46.0 | 3.22e-01 | 77.4% | 89.8% |
| 4993842 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 47.0 | 4.06e-01 | 84.5% | 83.7% |
| 4888951 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.61 | 45.0 | 4.30e-01 | 81.0% | 84.0% |
| 3487433 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.60 | 41.0 | 3.94e-01 | 70.2% | 78.0% |
| 3654609 | 109.4.1.1260 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long | 0.60 | 49.0 | 3.93e-01 | 92.9% | 62.9% |
| 3913762 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.58 | 43.0 | 3.59e-01 | 82.1% | 74.4% |
| 3406487 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.57 | 48.0 | 3.99e-01 | 95.2% | 66.5% |
| 4673650 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 46.0 | 3.69e-01 | 95.2% | 74.4% |
| 3779653 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.55 | 41.0 | 3.63e-01 | 79.8% | 82.4% |
| 3290011 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.52 | 41.0 | 3.92e-01 | 82.1% | 85.3% |
| 3958329 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.51 | 43.0 | 3.23e-01 | 98.8% | 34.9% |