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hypothetical_protein_pneo_cds_779

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_779__YP_009482389__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482389 ↗
Protein ID:
hypothetical_protein_pneo_cds_779
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-72
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 25.5 1.20e-05 52.8% 72.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.60 55.0 3.71e-01 100.0% 31.7%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 35.0 3.34e-01 72.2% 100.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 55.0 5.04e-01 70.8% 90.0%
3697864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 4.65e-01 70.8% 100.0%
3728200 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 53.0 5.41e-01 70.8% 100.0%
3915884 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.75 52.0 4.07e-01 72.2% 50.3%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.73 53.0 3.73e-01 76.4% 37.2%
3271229 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 49.0 4.91e-01 70.8% 81.3%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 49.0 4.50e-01 72.2% 95.7%
3200311 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 49.0 4.80e-01 75.0% 100.0%
3686935 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 53.0 4.77e-01 81.9% 89.0%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 62.0 4.01e-01 97.2% 31.8%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.69 53.0 3.86e-01 98.6% 31.1%
None — 0.69 49.0 2.98e-01 100.0% 11.9%
None — 0.68 59.0 3.42e-01 93.1% 96.6%
3191984 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 62.0 5.53e-01 100.0% 73.0%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 47.0 4.16e-01 70.8% 98.0%
3694013 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 55.0 4.93e-01 90.3% 86.0%
3311308 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 44.0 2.71e-01 70.8% 11.9%
3725291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 58.0 5.28e-01 98.6% 91.6%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 47.0 4.45e-01 75.0% 92.9%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.65 59.0 4.03e-01 100.0% 37.5%
3236774 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 56.0 3.66e-01 100.0% 32.9%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.62 54.0 4.09e-01 97.2% 68.2%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 51.0 5.36e-01 100.0% 98.5%
3213163 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.59 51.0 4.28e-01 100.0% 79.2%
None — 0.58 49.0 2.95e-01 100.0% 14.3%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 48.0 2.85e-01 100.0% 13.3%
3243105 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.58 51.0 4.72e-01 100.0% 85.3%
3810266 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 47.0 2.92e-01 100.0% 16.4%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 51.0 4.52e-01 97.2% 79.0%
3404007 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 49.0 3.05e-01 100.0% 22.1%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.54 48.0 4.53e-01 98.6% 81.2%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.50 42.0 2.67e-01 100.0% 48.1%
D2 medium residues 73-280
PDB