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hypothetical_protein_pneo_cds_789

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_789__YP_009482399__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482399 ↗
Protein ID:
hypothetical_protein_pneo_cds_789
Kingdom:
euk

Quality

71.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-84
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76
D2 medium residues 85-156_168-198
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.63 27.0 3.34e-01 74.8% 60.9%
4kx7A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.62 54.0 3.83e-01 98.1% 44.6%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 28.0 2.74e-01 75.7% 36.4%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.61 35.0 3.47e-01 89.3% 52.3%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 48.0 4.12e-01 85.4% 59.5%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 49.0 4.45e-01 92.2% 86.5%
4c0eA02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 47.0 3.69e-01 94.2% 66.7%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 3.66e-01 88.3% 54.6%
4ozvA00 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.54 48.0 3.39e-01 100.0% 59.2%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 43.0 4.23e-01 91.3% 82.9%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 37.0 3.84e-01 100.0% 78.1%
1x5bA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 47.0 4.36e-01 100.0% 86.7%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 46.0 3.01e-01 99.0% 57.8%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 3.85e-01 98.1% 72.0%
3fkeA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.52 26.0 2.94e-01 72.8% 60.6%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 43.0 4.01e-01 94.2% 85.5%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.50 38.0 2.92e-01 82.5% 64.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3358974 109.4.1.1524 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZFYVE26 0.66 48.0 4.03e-01 76.7% 61.7%
3334425 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 58.0 3.84e-01 100.0% 40.0%
3807017 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.61 54.0 4.24e-01 100.0% 71.6%
4999761 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.60 52.0 3.92e-01 96.1% 50.8%
3528058 5059.1.1.8 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.60 50.0 3.66e-01 92.2% 95.6%
3804467 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 54.0 4.35e-01 100.0% 63.0%
3441173 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 53.0 4.27e-01 100.0% 68.6%
3316857 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 53.0 4.30e-01 100.0% 64.5%
3248235 109.3.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28996 0.59 47.0 4.47e-01 95.1% 71.2%
3592460 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 4.45e-01 100.0% 75.9%
3645713 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 4.73e-01 100.0% 91.4%
3997679 109.4.1.2154 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.58 52.0 3.73e-01 100.0% 43.2%
3815090 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 47.0 4.77e-01 95.1% 91.0%
3458178 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 51.0 4.50e-01 100.0% 80.0%
3438525 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 46.0 4.38e-01 95.1% 74.2%
3429481 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 50.0 4.25e-01 100.0% 69.4%
3326709 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.57 50.0 4.09e-01 100.0% 74.6%
3337139 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 51.0 4.42e-01 100.0% 90.6%
3831914 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 50.0 3.56e-01 100.0% 42.5%
3659858 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.57 50.0 3.80e-01 100.0% 51.5%
3671635 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.57 50.0 3.76e-01 100.0% 64.2%
3584867 109.4.1.83 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.56 47.0 4.13e-01 98.1% 58.9%
3655236 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 45.0 4.66e-01 95.1% 94.7%
3657284 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.56 50.0 3.99e-01 100.0% 73.8%
3805406 109.4.1.1331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.56 49.0 4.23e-01 100.0% 75.8%
3677029 109.4.1.1985 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, Eplus_motif, E_motif 0.55 48.0 3.59e-01 98.1% 40.8%
1289949 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 3.66e-01 88.3% 54.6%
4029405 109.4.1.584 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fis1_TPR_C 0.55 43.0 3.88e-01 91.3% 61.4%
3384820 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 48.0 4.18e-01 99.0% 86.3%
3460995 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.54 47.0 4.11e-01 100.0% 74.5%
3831134 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 43.0 4.31e-01 95.1% 87.6%
3427191 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 47.0 3.97e-01 100.0% 68.9%
3801801 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.53 45.0 4.45e-01 95.1% 88.2%
3461675 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 46.0 4.44e-01 98.1% 96.7%
3806322 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 46.0 4.52e-01 99.0% 96.5%
3383670 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 45.0 3.99e-01 98.1% 64.5%
3826382 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 45.0 4.34e-01 97.1% 93.3%
3384518 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 46.0 4.11e-01 100.0% 83.3%
3669847 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.52 46.0 3.60e-01 100.0% 60.3%
3335166 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.52 44.0 3.51e-01 98.1% 48.0%
3701336 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.77e-01 95.1% 62.7%
3804773 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.99e-01 100.0% 84.7%
3421464 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.60e-01 100.0% 68.8%
3436624 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 4.18e-01 98.1% 88.0%
3676669 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 3.96e-01 95.1% 77.5%