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hypothetical_protein_pneo_cds_7
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_7__YP_009481617__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009481617 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_7
- Kingdom:
- euk
Quality
71.3
mean pLDDT
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-106
Domain cluster:
rep: hypothetical_protein_pdul_cds_1__YP_008318537__Pandoravirus_dulcis__1349409__D43-109
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 71.0 | 5.40e-01 | 98.6% | 43.9% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.76 | 68.0 | 5.00e-01 | 100.0% | 39.2% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 59.0 | 5.05e-01 | 90.0% | 54.9% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.71 | 60.0 | 6.05e-01 | 94.3% | 91.5% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 54.0 | 5.33e-01 | 87.1% | 81.6% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 46.0 | 5.22e-01 | 81.4% | 98.0% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 45.0 | 3.60e-01 | 75.7% | 36.0% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 46.0 | 4.97e-01 | 74.3% | 89.7% |
| 1vryA00 | 6.10.250.2810 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 51.0 | 5.42e-01 | 88.6% | 98.4% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.65 | 49.0 | 3.08e-01 | 81.4% | 15.1% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 3.91e-01 | 77.1% | 90.0% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.64 | 49.0 | 4.04e-01 | 82.9% | 47.7% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.63 | 50.0 | 3.47e-01 | 90.0% | 77.2% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.62 | 46.0 | 4.79e-01 | 82.9% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3241687 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.83 | 76.0 | 6.35e-01 | 100.0% | 62.6% |
| 5024703 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.79 | 61.0 | 4.36e-01 | 81.4% | 91.6% |
| 4086475 | 3755.3.1.466 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CC_BshC | 0.78 | 66.0 | 5.02e-01 | 92.9% | 41.3% |
| 4953182 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.76 | 51.0 | 3.67e-01 | 70.0% | 26.7% |
| 4936633 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.74 | 53.0 | 3.71e-01 | 75.7% | 25.4% |
| 4963289 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.73 | 54.0 | 3.92e-01 | 80.0% | 28.9% |
| 3952698 | 5069.1.3.2 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Fumarate_red_C | 0.69 | 50.0 | 4.17e-01 | 75.7% | 50.0% |
D2
high
residues 111-218
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qjoB02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 43.0 | 3.87e-01 | 80.6% | 71.0% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 45.0 | 3.77e-01 | 89.8% | 72.0% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.55 | 39.0 | 3.37e-01 | 83.3% | 47.1% |
| 5cfjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 41.0 | 3.81e-01 | 80.6% | 72.1% |
| 3i9xA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 40.0 | 3.60e-01 | 84.3% | 76.4% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 41.0 | 3.69e-01 | 87.0% | 64.2% |
| 3edsA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 42.0 | 3.98e-01 | 92.6% | 81.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925978 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.58 | 44.0 | 3.82e-01 | 78.7% | 84.8% |
| 3518237 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.57 | 45.0 | 3.72e-01 | 88.0% | 61.9% |
| 3665538 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.56 | 41.0 | 4.07e-01 | 76.9% | 90.4% |
| 4576717 | 7529.1.1.3 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N | 0.54 | 43.0 | 3.54e-01 | 84.3% | 68.9% |
| 3824883 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.54 | 37.0 | 4.13e-01 | 71.3% | 98.8% |
| 4361962 | 221.1.1.180 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF25985 | 0.51 | 35.0 | 3.42e-01 | 71.3% | 79.2% |
| 2146540 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 40.0 | 3.71e-01 | 85.2% | 69.1% |
| 4960496 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 39.0 | 3.50e-01 | 82.4% | 61.3% |