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hypothetical_protein_pneo_cds_80

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_80__YP_009481690__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481690 ↗
Protein ID:
hypothetical_protein_pneo_cds_80
Kingdom:
euk

Quality

62.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-193
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra8A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 57.0 4.30e-01 100.0% 39.6%
4kxfP04 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.66 51.0 3.48e-01 98.3% 24.0%
3lk7A03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.66 42.0 4.10e-01 95.9% 58.2%
4u7lA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.57 44.0 4.29e-01 100.0% 74.4%
2egvA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.54 34.0 3.12e-01 74.4% 47.9%
6j0pA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 46.0 3.63e-01 100.0% 53.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3612839 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 51.0 3.56e-01 100.0% 24.2%
3676902 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 51.0 3.81e-01 100.0% 30.5%
3459075 207.1.1.133 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 0.73 53.0 4.12e-01 99.2% 36.8%
3508237 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.72 49.0 3.97e-01 100.0% 37.8%
3832080 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 48.0 3.00e-01 100.0% 14.4%
3333727 2008.3.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N 0.69 37.0 3.92e-01 76.9% 57.3%
3422885 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 52.0 3.80e-01 100.0% 31.3%
3448886 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 49.0 4.01e-01 100.0% 43.3%
1406722 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.66 47.0 4.23e-01 100.0% 54.2%
3429636 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 46.0 4.82e-01 100.0% 83.3%
3216118 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 38.0 3.65e-01 95.9% 54.5%
3202320 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 53.0 3.63e-01 100.0% 34.8%
3941023 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.58 53.0 4.28e-01 100.0% 64.9%
3601573 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 51.0 3.24e-01 100.0% 19.0%
3940236 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.58 53.0 4.25e-01 100.0% 57.8%
3934679 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 53.0 4.18e-01 100.0% 61.3%
3940550 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.57 52.0 3.44e-01 98.3% 31.1%
3724020 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.57 52.0 3.60e-01 100.0% 31.9%
4236680 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.53 47.0 3.22e-01 99.2% 31.8%
4184822 2002.1.1.69 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase 0.53 47.0 2.98e-01 99.2% 73.0%
5036277 2007.17.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-terminal domain in a putative metallopeptidase YP_676511.1 › N-terminal domain in a putative metallopeptidase YP_676511.1 › DUF1485 0.53 46.0 4.13e-01 95.9% 84.1%
165388 2488.1.1.12 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA 0.53 34.0 3.08e-01 73.6% 47.6%