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hypothetical_protein_pneo_cds_817
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_817__YP_009482427__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482427 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_817
- Kingdom:
- euk
Quality
83.3
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 48-137
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.61 | 39.0 | 3.59e-01 | 74.4% | 48.3% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 46.0 | 4.17e-01 | 80.0% | 65.3% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 48.0 | 4.09e-01 | 88.9% | 73.2% |
| 4c0eA01 | 1.25.40.790 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 49.0 | 3.45e-01 | 98.9% | 55.5% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 42.0 | 3.81e-01 | 83.3% | 63.5% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 43.0 | 3.78e-01 | 86.7% | 72.4% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 40.0 | 3.54e-01 | 82.2% | 60.3% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.52 | 37.0 | 3.46e-01 | 74.4% | 79.8% |
| 8amzP01 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 46.0 | 3.05e-01 | 100.0% | 31.7% |
| 1puoB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.52 | 40.0 | 3.49e-01 | 84.4% | 79.6% |
| 1l3eB00 | 1.20.1020.10 | Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain | 0.51 | 35.0 | 3.41e-01 | 70.0% | 91.1% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.51 | 46.0 | 3.52e-01 | 100.0% | 49.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597291 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.69 | 40.0 | 4.15e-01 | 84.4% | 61.2% |
| 3641692 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.63 | 50.0 | 4.13e-01 | 87.8% | 63.5% |
| 3544646 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.62 | 38.0 | 4.23e-01 | 75.6% | 78.6% |
| 3694069 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.60 | 53.0 | 3.39e-01 | 100.0% | 32.2% |
| 140066 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.59 | 40.0 | 3.60e-01 | 70.0% | 57.3% |
| 3798489 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.58 | 42.0 | 4.00e-01 | 98.9% | 63.6% |
| 3175466 | 109.4.1.1228 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_24 | 0.57 | 50.0 | 2.97e-01 | 100.0% | 22.8% |
| 3243147 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 44.0 | 3.97e-01 | 84.4% | 65.6% |
| 5045430 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.56 | 46.0 | 2.81e-01 | 90.0% | 97.7% |
| 5073861 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 42.0 | 3.92e-01 | 81.1% | 63.5% |
| 3613374 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.73e-01 | 98.9% | 70.9% |
| 3806399 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.55 | 49.0 | 4.27e-01 | 100.0% | 75.7% |
| 5043157 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 43.0 | 3.99e-01 | 85.6% | 67.8% |
| 3703129 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 3.78e-01 | 100.0% | 82.0% |
| 3455854 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.54 | 49.0 | 3.83e-01 | 100.0% | 51.6% |
| 4554191 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.54 | 36.0 | 3.27e-01 | 85.6% | 48.4% |
| 1685105 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.54 | 38.0 | 3.93e-01 | 87.8% | 78.3% |
| 3213401 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 37.0 | 3.78e-01 | 83.3% | 76.7% |
| 4993513 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.51 | 41.0 | 3.74e-01 | 86.7% | 68.3% |
| 3449702 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.51 | 44.0 | 3.39e-01 | 100.0% | 71.0% |
| 5081092 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.51 | 40.0 | 3.62e-01 | 85.6% | 65.9% |
| 3187164 | 109.4.1.954 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_N | 0.50 | 44.0 | 3.26e-01 | 100.0% | 63.1% |
| 3499662 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.50 | 37.0 | 3.27e-01 | 80.0% | 51.9% |
D2
medium
residues 337-438
D3
medium
residues 439-551