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hypothetical_protein_pneo_cds_925

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_925__YP_009482535__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482535 ↗
Protein ID:
hypothetical_protein_pneo_cds_925
Kingdom:
euk

Quality

59.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 139-335
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_630__YP_009483321__Pandoravirus_quercus__2107709__D155-338
D2 medium residues 85-138
PDB
D3 medium residues 336-371_398-509
PDB
D4 medium residues 591-646
PDB
D5 medium residues 647-792
PDB
D6 medium residues 793-868
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.81 49.0 4.60e-01 100.0% 50.0%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.73 45.0 3.95e-01 100.0% 42.0%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 48.0 4.37e-01 100.0% 56.0%
2wtvA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.67 53.0 4.11e-01 86.8% 54.1%
1iqpA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.66 57.0 5.40e-01 100.0% 98.9%
5lohA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 50.0 3.87e-01 86.8% 47.2%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 38.0 3.58e-01 100.0% 47.4%
4itjB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 48.0 3.67e-01 85.5% 51.1%
5cemA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 49.0 3.75e-01 86.8% 52.5%
6vg3B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.61 50.0 3.78e-01 90.8% 62.4%
1dcqA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 40.0 3.18e-01 100.0% 33.8%
3lvqE02 1.25.40.950 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 38.0 3.88e-01 96.1% 68.9%
2wtkC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 49.0 3.66e-01 94.7% 60.2%
2wglA00 1.10.4190.10 Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF 0.56 44.0 3.23e-01 86.8% 70.3%
3zqcA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 33.0 3.57e-01 100.0% 70.3%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 44.0 3.79e-01 90.8% 92.7%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 40.0 3.84e-01 80.3% 68.9%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.54 39.0 3.95e-01 100.0% 75.6%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 39.0 3.58e-01 100.0% 58.4%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 45.0 3.18e-01 94.7% 51.4%
4xxlA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.53 37.0 3.58e-01 76.3% 78.3%
2v8iA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 43.0 2.69e-01 92.1% 16.8%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 44.0 2.94e-01 96.1% 57.4%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.51 39.0 3.38e-01 96.1% 50.4%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 39.0 3.54e-01 85.5% 99.1%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 39.0 3.21e-01 84.2% 99.3%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.51 46.0 4.07e-01 100.0% 83.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004518 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.73 46.0 4.69e-01 100.0% 65.3%
3360186 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 41.0 3.01e-01 94.7% 23.6%
3730068 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 42.0 3.48e-01 100.0% 37.1%
5041446 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 44.0 4.44e-01 100.0% 73.3%
3991007 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.60 40.0 3.75e-01 93.4% 54.7%
3926243 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.60 40.0 3.63e-01 90.8% 52.0%
3796249 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.59 43.0 3.49e-01 96.1% 39.3%
3790046 109.3.1.173 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 0.59 43.0 2.93e-01 96.1% 20.3%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 38.0 3.27e-01 96.1% 40.8%
3259886 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.58 39.0 3.31e-01 100.0% 38.5%
3577706 109.3.1.173 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 0.58 43.0 3.27e-01 96.1% 32.4%
4888417 109.3.1.173 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 0.57 36.0 2.91e-01 97.4% 31.2%
3890204 109.3.1.173 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 0.56 45.0 3.04e-01 90.8% 26.3%
4559319 109.3.1.100 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+TRP_2+Ank_2 0.55 39.0 2.91e-01 97.4% 27.6%
3924951 609.1.1.1 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.55 42.0 3.49e-01 96.1% 45.7%
3594858 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 39.0 2.61e-01 85.5% 24.4%
4558363 109.2.1.21 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Pectate_lyase_2 0.52 43.0 2.57e-01 92.1% 12.4%
3238992 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.51 41.0 2.71e-01 88.2% 32.7%
3250588 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.51 34.0 3.25e-01 94.7% 55.8%
4129265 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.51 39.0 3.29e-01 82.9% 50.0%
3458159 192.29.1.54 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BPS1 0.50 41.0 3.03e-01 92.1% 54.9%
D7 medium residues 869-976
PDB