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hypothetical_protein_pneo_cds_96

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_96__YP_009481706__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009481706 ↗
Protein ID:
hypothetical_protein_pneo_cds_96
Kingdom:
euk

Quality

38.8 mean pLDDT

Taxonomy

TaxID: 2107708

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 430-468_481-515
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 49.0 4.86e-01 81.1% 67.1%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 45.0 4.55e-01 82.4% 65.3%
3dlqR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 48.0 4.35e-01 83.8% 54.0%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.68 52.0 4.18e-01 82.4% 84.1%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.65 49.0 4.18e-01 81.1% 80.8%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.64 50.0 3.79e-01 82.4% 85.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 48.0 4.60e-01 85.1% 67.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 4.51e-01 83.8% 67.4%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.63 42.0 4.39e-01 85.1% 75.8%
3l6vA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.63 51.0 3.30e-01 86.5% 97.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 42.0 3.65e-01 70.3% 87.4%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 50.0 4.11e-01 90.5% 71.8%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.34e-01 83.8% 64.2%
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.61 50.0 3.29e-01 87.8% 99.7%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 50.0 4.25e-01 90.5% 79.5%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 4.30e-01 83.8% 65.9%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.42e-01 83.8% 70.6%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.37e-01 83.8% 71.4%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.21e-01 83.8% 65.2%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 4.33e-01 85.1% 68.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 40.0 3.54e-01 70.3% 93.6%
7b7nH01 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.59 46.0 3.84e-01 83.8% 97.6%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.59 47.0 3.08e-01 87.8% 94.7%
5l0qB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.01e-01 83.8% 69.4%
6i6rB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.07e-01 83.8% 61.6%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.45e-01 78.4% 40.8%
5xctB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.98e-01 85.1% 67.9%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 3.98e-01 85.1% 74.1%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.57 45.0 3.83e-01 85.1% 65.0%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 35.0 2.98e-01 77.0% 36.3%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.57 46.0 3.74e-01 90.5% 48.6%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.82e-01 83.8% 75.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.57 38.0 3.63e-01 70.3% 100.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.71e-01 81.1% 63.2%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.56 45.0 3.69e-01 87.8% 66.7%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.92e-01 85.1% 74.5%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 40.0 3.68e-01 74.3% 87.5%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.27e-01 87.8% 31.5%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.56 42.0 3.61e-01 79.7% 55.6%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 3.67e-01 81.1% 65.0%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.18e-01 86.5% 68.1%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.55 39.0 4.01e-01 83.8% 79.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.55 40.0 4.02e-01 83.8% 78.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.50e-01 74.3% 59.2%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 2.91e-01 77.0% 40.7%
1ynjJ01 1.10.1790.20 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.50 34.0 2.94e-01 70.3% 44.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881492 109.4.1.411 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.80 72.0 4.69e-01 100.0% 31.0%
3248572 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.72 41.0 4.06e-01 70.3% 52.5%
3491906 376.1.1.66 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.72 61.0 6.12e-01 100.0% 92.0%
2321850 11.1.1.245 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_6 0.71 49.0 4.83e-01 82.4% 66.7%
5046788 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 57.0 4.77e-01 95.9% 54.2%
3905386 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 5.01e-01 82.4% 80.0%
4993871 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.67 48.0 4.12e-01 75.7% 63.5%
4104603 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.67 49.0 4.52e-01 83.8% 61.1%
3913907 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.66 48.0 4.55e-01 82.4% 63.3%
3560830 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.66 49.0 4.55e-01 82.4% 63.3%
3914701 11.1.1.129 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.66 49.0 4.30e-01 83.8% 53.6%
3653231 11.1.1.652 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.65 51.0 4.12e-01 83.8% 49.3%
3762665 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 48.0 3.78e-01 83.8% 37.4%
3896180 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 47.0 4.23e-01 82.4% 56.0%
3344184 11.1.1.652 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.65 51.0 4.08e-01 85.1% 48.3%
5058314 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 4.37e-01 83.8% 59.0%
4027310 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.64 47.0 3.89e-01 87.8% 43.8%
1479 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 48.0 4.60e-01 85.1% 67.8%
4998394 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.64 49.0 3.86e-01 82.4% 88.4%
3528768 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 48.0 4.52e-01 85.1% 65.6%
3404526 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 4.51e-01 83.8% 64.2%
3754027 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 47.0 4.49e-01 83.8% 68.2%
4544770 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.63 51.0 4.17e-01 89.2% 74.3%
3904085 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.79e-01 83.8% 82.9%
3776609 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 3.94e-01 85.1% 47.2%
5041274 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 4.84e-01 83.8% 84.3%
5033362 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.19e-01 83.8% 64.7%
4448380 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.61 51.0 4.35e-01 90.5% 85.0%
3569194 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 46.0 4.10e-01 85.1% 56.2%
3680066 10.10.1.5 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 0.61 49.0 3.80e-01 85.1% 82.6%
3265105 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.61 48.0 4.45e-01 85.1% 66.3%
4988123 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.06e-01 83.8% 53.0%
3800901 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 46.0 4.06e-01 83.8% 56.2%
3368065 11.1.1.813 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.60 46.0 3.91e-01 83.8% 68.8%
4083103 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 41.0 3.41e-01 71.6% 79.2%
3258964 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.18e-01 83.8% 65.6%
5047765 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 46.0 3.87e-01 83.8% 85.6%
5064808 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 4.20e-01 82.4% 69.5%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.59 46.0 2.99e-01 83.8% 69.0%
3783286 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.59 41.0 4.42e-01 79.7% 88.3%
4954325 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.74e-01 83.8% 48.0%
3621342 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 43.0 3.98e-01 78.4% 94.7%
3919726 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 43.0 4.05e-01 83.8% 64.4%
3253366 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.09e-01 83.8% 66.0%
3977881 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 40.0 3.11e-01 71.6% 80.6%
3277296 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.58 45.0 3.77e-01 85.1% 66.9%
3734369 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 45.0 2.99e-01 85.1% 44.3%
3980387 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 40.0 3.09e-01 73.0% 73.3%
4401347 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.56 39.0 4.32e-01 75.7% 98.2%
224066 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.55 40.0 4.05e-01 85.1% 77.9%
4021292 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 48.0 2.98e-01 97.3% 59.1%
4024940 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 37.0 2.84e-01 70.3% 89.4%
2775442 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.09e-01 73.0% 94.9%
None 0.54 43.0 2.58e-01 87.8% 15.0%
3678850 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.54 38.0 3.21e-01 75.7% 65.9%
5041180 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 39.0 3.17e-01 78.4% 43.1%
3465043 6108.1.1.0 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.52 42.0 2.49e-01 87.8% 14.8%
3928752 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 37.0 3.64e-01 81.1% 71.2%
3263394 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 40.0 3.41e-01 86.5% 60.0%
3397686 223.3.1.7 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Glutaminase 0.51 35.0 2.66e-01 71.6% 78.9%
3621133 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.67e-01 85.1% 98.0%
4023481 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 38.0 2.94e-01 79.7% 80.6%