hypothetical_protein_pneo_cds_979

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_979__YP_009482589__Pandoravirus_neocaledonia__2107708

Identity

70.8 mean pLDDT

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

View cluster (7 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-77

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19255.5 best	DUF5902	83.0	2.20e-23	100.0%	65.4%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4evfA01	1.10.220.10	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin	0.63	46.0	4.63e-01	97.2%	77.5%
3u52D00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.54	45.0	2.99e-01	97.2%	82.0%
2ra1A03	1.20.58.770	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	38.0	4.04e-01	95.8%	88.9%
7toiA01	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.52	39.0	2.93e-01	86.1%	63.7%
3nlcA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	41.0	2.96e-01	93.1%	45.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3878515	509.1.1.10 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1	0.57	37.0	3.75e-01	97.2%	65.3%
3781311	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.56	42.0	3.17e-01	83.3%	90.0%
2642520	7579.1.1.42 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4	0.54	40.0	2.71e-01	81.9%	82.4%
4072531	7579.1.1.6 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1	0.53	40.0	2.77e-01	83.3%	75.9%
3167157	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	38.0	3.09e-01	80.6%	71.0%

D2 medium residues 85-111_123-189

PDB

D3 medium residues 190-221_306-354

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fprB00	3.30.70.2910	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	45.0	3.91e-01	90.1%	89.1%
4gafB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	36.0	3.25e-01	88.9%	52.7%
3psqB00	2.40.260.10	Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase	0.51	44.0	3.38e-01	95.1%	67.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1124197	304.141.1.1 ↗	a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7	0.56	45.0	3.88e-01	88.9%	86.9%
3823835	304.4.1.78 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036	0.56	43.0	3.97e-01	88.9%	63.8%
3495414	312.1.1.16 ↗	a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_1	0.55	44.0	3.26e-01	87.7%	34.9%
5040271	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.54	43.0	3.66e-01	87.7%	64.3%
3295182	11.1.1.808 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7036	0.53	45.0	3.93e-01	97.5%	61.6%
5065856	312.1.1.0 ↗	a+b three layers › HIT-like › HIT-related › HIT-related	0.52	42.0	3.39e-01	88.9%	49.1%
5004080	886.1.1.2 ↗	a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like	0.52	42.0	3.57e-01	95.1%	52.1%
3782218	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	43.0	3.69e-01	92.6%	64.6%
5052217	312.1.1.0 ↗	a+b three layers › HIT-like › HIT-related › HIT-related	0.50	41.0	2.95e-01	92.6%	81.2%

D4 medium residues 222-294

PDB