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hypothetical_protein_pneo_cds_983

Euk-Vir

Pandoravirus_neocaledonia

hypothetical_protein_pneo_cds_983__YP_009482593__Pandoravirus_neocaledonia__2107708

Identity

Accession:: YP_009482593 ↗
Protein ID:: hypothetical_protein_pneo_cds_983
Kingdom:: euk

Quality

74.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (44 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-126

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e7qA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	38.0	3.09e-01	82.4%	33.2%
2f07B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	35.0	2.96e-01	85.2%	37.8%
7d5qA01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.50	41.0	3.48e-01	88.9%	53.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3556006	5001.1.1.10 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase	0.56	48.0	3.72e-01	96.3%	86.9%
4941976	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	48.0	4.79e-01	100.0%	92.7%
3884902	5001.1.1.10 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase	0.56	48.0	3.70e-01	96.3%	86.2%
4979758	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.55	46.0	3.70e-01	91.7%	48.6%
5065250	4156.1.1.7 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814	0.53	34.0	3.20e-01	83.3%	51.1%
4995211	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	42.0	3.53e-01	88.9%	47.5%
4926920	5001.1.1.293 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › MASE3	0.53	40.0	3.20e-01	81.5%	91.7%
3713100	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	44.0	3.49e-01	92.6%	45.7%
3359510	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.52	39.0	3.41e-01	76.9%	86.5%
3573714	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	43.0	3.50e-01	92.6%	48.8%
3406815	5001.1.1.50 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › DUF4791	0.51	39.0	3.28e-01	81.5%	97.4%
5077263	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	40.0	3.39e-01	88.0%	47.7%
3563161	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	42.0	3.60e-01	88.9%	60.6%
3941776	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	40.0	3.33e-01	87.0%	81.0%

D2 high residues 164-310

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d2uE01	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.68	46.0	4.19e-01	97.3%	53.2%
3mswA00	2.40.128.720	Mainly Beta › Beta Barrel › Lipocalin ›	0.67	32.0	3.36e-01	86.4%	49.6%
4c92G00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.64	29.0	3.97e-01	94.6%	84.0%
3pggA00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.62	29.0	3.94e-01	97.3%	84.6%
1wr2A01	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.61	41.0	4.08e-01	99.3%	63.7%
3cjeA00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.59	34.0	3.44e-01	98.6%	54.7%
1lqvB00	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.58	39.0	3.70e-01	74.1%	57.2%
6x1kA01	2.40.160.20	Mainly Beta › Beta Barrel › Porin ›	0.56	33.0	3.72e-01	91.2%	74.8%
6bs6A04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	25.0	2.81e-01	96.6%	54.3%
2wbnA00	3.30.420.280	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.54	47.0	4.42e-01	95.9%	86.5%
2wdtC02	3.30.1490.420	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2	0.54	31.0	3.62e-01	97.3%	80.2%
4dkwA00	3.30.420.280	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.53	47.0	4.30e-01	99.3%	84.5%
1pbyA02	2.40.128.120	Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2	0.50	34.0	3.94e-01	98.0%	96.2%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1219772	233.1.1.1 ↗	a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I	0.67	46.0	4.24e-01	98.0%	54.9%
4024090	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.66	31.0	3.91e-01	97.3%	72.2%
3592467	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.66	31.0	4.26e-01	95.2%	88.0%
3704663	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.65	30.0	4.17e-01	94.6%	86.7%
3505097	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.65	30.0	3.92e-01	94.6%	76.5%
409204	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.64	31.0	3.63e-01	96.6%	64.1%
3621457	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.63	29.0	4.08e-01	94.6%	90.0%
3809146	4210.1.1.0 ↗	a+b two layers › WGR domain › WGR domain › WGR domain	0.63	37.0	4.60e-01	98.0%	94.4%
3712963	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.63	30.0	3.64e-01	95.2%	69.1%
3595291	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	29.0	3.70e-01	95.2%	72.2%
3518029	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.61	30.0	3.55e-01	95.9%	68.0%
5035305	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.58	27.0	3.55e-01	79.6%	78.8%
3614126	868.1.1.0 ↗	a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related	0.56	34.0	3.09e-01	100.0%	44.1%

D3 medium residues 311-430

PDB

Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292

D4 medium residues 431-505

PDB

Domain cluster: rep: hypothetical_protein_pqer_cds_209__YP_009482900__Pandoravirus_quercus__2107709__D545-616