←Back to structures
hypothetical_protein_pneo_cds_992
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_992__YP_009482602__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482602 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_992
- Kingdom:
- euk
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-57
Domain cluster:
representative
D2
medium
residues 58-130
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.72 | 56.0 | 4.07e-01 | 82.2% | 45.3% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.69 | 48.0 | 5.01e-01 | 72.6% | 89.7% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 51.0 | 3.78e-01 | 80.8% | 68.9% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.67 | 50.0 | 4.35e-01 | 82.2% | 82.1% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 46.0 | 4.03e-01 | 100.0% | 48.2% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 47.0 | 3.70e-01 | 75.3% | 78.3% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 47.0 | 4.19e-01 | 100.0% | 53.9% |
| 4bszB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.65 | 56.0 | 4.39e-01 | 94.5% | 49.3% |
| 4aciA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 49.0 | 3.71e-01 | 82.2% | 46.0% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 49.0 | 4.62e-01 | 87.7% | 92.5% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.62 | 50.0 | 3.27e-01 | 87.7% | 78.5% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.61 | 45.0 | 3.81e-01 | 79.5% | 82.4% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.60 | 44.0 | 4.43e-01 | 98.6% | 76.7% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 52.0 | 3.73e-01 | 97.3% | 68.8% |
| 1qymA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.59 | 47.0 | 3.33e-01 | 86.3% | 30.9% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 40.0 | 3.08e-01 | 72.6% | 41.2% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.58 | 44.0 | 4.21e-01 | 94.5% | 70.6% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 47.0 | 4.11e-01 | 90.4% | 75.9% |
| 2bk9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 47.0 | 3.82e-01 | 94.5% | 60.8% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.57 | 41.0 | 3.34e-01 | 90.4% | 42.0% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 3.74e-01 | 91.8% | 91.3% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.56 | 40.0 | 3.80e-01 | 95.9% | 63.5% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.55 | 45.0 | 4.06e-01 | 87.7% | 68.7% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 42.0 | 3.92e-01 | 100.0% | 66.3% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.54 | 44.0 | 3.82e-01 | 93.2% | 70.1% |
| 3gyuA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 47.0 | 3.27e-01 | 100.0% | 74.8% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.52 | 46.0 | 4.40e-01 | 94.5% | 89.0% |
| 3ibpA01 | 1.20.58.850 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 35.0 | 3.53e-01 | 94.5% | 72.2% |
| 6lccA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 44.0 | 2.81e-01 | 95.9% | 38.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786750 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.77 | 59.0 | 5.21e-01 | 82.2% | 84.6% |
| 3521098 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.74 | 54.0 | 4.17e-01 | 78.1% | 79.4% |
| 3727141 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.68 | 53.0 | 3.89e-01 | 86.3% | 43.3% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.68 | 48.0 | 4.20e-01 | 80.8% | 50.5% |
| 5076550 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.68 | 52.0 | 4.33e-01 | 83.6% | 76.2% |
| 5073392 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.64 | 48.0 | 4.39e-01 | 94.5% | 61.1% |
| 3225714 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.63 | 49.0 | 3.91e-01 | 86.3% | 53.5% |
| 3248074 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.63 | 55.0 | 4.38e-01 | 100.0% | 91.0% |
| 3596327 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.63 | 43.0 | 4.50e-01 | 75.3% | 80.0% |
| 5050035 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.60 | 50.0 | 3.79e-01 | 97.3% | 83.6% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.59 | 41.0 | 3.36e-01 | 94.5% | 40.0% |
| 4444553 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.59 | 40.0 | 2.57e-01 | 90.4% | 15.7% |
| 3572626 | 3704.1.1.1 ↗ | alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › APAF1_C | 0.58 | 47.0 | 3.84e-01 | 95.9% | 52.9% |
| 3567554 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.57 | 41.0 | 3.47e-01 | 76.7% | 93.1% |
| 3992828 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 47.0 | 3.39e-01 | 100.0% | 95.6% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 45.0 | 3.81e-01 | 94.5% | 55.8% |
| 3582590 | 3291.1.1.9 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 | 0.53 | 48.0 | 4.08e-01 | 100.0% | 80.0% |
| 4499889 | 192.24.1.1 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical | 0.52 | 45.0 | 4.12e-01 | 93.2% | 93.5% |
| 4857248 | 5064.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL | 0.52 | 44.0 | 3.69e-01 | 95.9% | 82.0% |
| 3635012 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 38.0 | 3.30e-01 | 94.5% | 48.3% |
| 3784491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 48.0 | 4.01e-01 | 100.0% | 76.7% |
| 3692753 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.52 | 46.0 | 3.66e-01 | 100.0% | 82.7% |