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hypothetical_protein_pneo_cds_998
Euk-VirPandoravirus_neocaledonia
hypothetical_protein_pneo_cds_998__YP_009482608__Pandoravirus_neocaledonia__2107708
Identity
- Accession:
- YP_009482608 ↗
- Protein ID:
- hypothetical_protein_pneo_cds_998
- Kingdom:
- euk
Quality
73.8
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 477-581
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 42.0 | 4.52e-01 | 100.0% | 74.4% |
| 4ffbC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 44.0 | 3.44e-01 | 100.0% | 31.6% |
| 1zs3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 51.0 | 4.33e-01 | 94.3% | 80.1% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 49.0 | 4.34e-01 | 91.4% | 89.9% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.58 | 49.0 | 4.66e-01 | 100.0% | 77.2% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 44.0 | 4.27e-01 | 91.4% | 74.4% |
| 5jjxA01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 36.0 | 2.59e-01 | 98.1% | 22.6% |
| 3d85C00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 42.0 | 3.95e-01 | 82.9% | 79.7% |
| 2yinA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.55 | 49.0 | 4.62e-01 | 100.0% | 84.4% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.54 | 42.0 | 4.14e-01 | 96.2% | 76.1% |
| 3qxfA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 41.0 | 2.92e-01 | 100.0% | 25.8% |
| 7twaC00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 43.0 | 3.48e-01 | 91.4% | 67.9% |
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 36.0 | 2.79e-01 | 100.0% | 29.6% |
| 6v88A00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.52 | 35.0 | 3.41e-01 | 95.2% | 61.2% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.52 | 45.0 | 3.63e-01 | 99.0% | 65.3% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.65e-01 | 92.4% | 69.4% |
| 3bqkA02 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.50 | 44.0 | 3.82e-01 | 93.3% | 82.6% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.50 | 44.0 | 3.64e-01 | 99.0% | 74.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3327782 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.67 | 40.0 | 2.38e-01 | 100.0% | 7.7% |
| 3257672 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 38.0 | 2.35e-01 | 100.0% | 10.3% |
| 3360186 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.66 | 40.0 | 3.28e-01 | 100.0% | 32.3% |
| 3186674 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 38.0 | 3.37e-01 | 98.1% | 38.7% |
| 5076373 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.65 | 39.0 | 3.97e-01 | 92.4% | 60.0% |
| 3660543 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 44.0 | 3.83e-01 | 100.0% | 47.7% |
| 5023805 | 3281.1.2.10 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdeh_related | 0.63 | 45.0 | 3.57e-01 | 74.3% | 91.3% |
| 3576207 | 109.4.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin | 0.62 | 53.0 | 4.48e-01 | 100.0% | 55.0% |
| 3257419 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.62 | 38.0 | 3.70e-01 | 91.4% | 54.2% |
| 4997481 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.61 | 33.0 | 3.44e-01 | 92.4% | 54.0% |
| 3474944 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 3.92e-01 | 100.0% | 37.4% |
| 3969040 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.58 | 53.0 | 3.98e-01 | 100.0% | 63.5% |
| 3802123 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 35.0 | 3.29e-01 | 100.0% | 48.1% |
| 3788756 | 620.1.1.7 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › Vezatin | 0.56 | 40.0 | 2.99e-01 | 72.4% | 58.9% |
| 4587044 | 5050.1.1.68 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Ycf1 | 0.56 | 39.0 | 3.10e-01 | 72.4% | 50.0% |
| 4955536 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.56 | 51.0 | 3.99e-01 | 100.0% | 68.6% |
| 4323766 | 150.3.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 | 0.56 | 43.0 | 3.65e-01 | 82.9% | 70.3% |
| 4624742 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.55 | 47.0 | 4.59e-01 | 97.1% | 84.3% |
| 3832302 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 34.0 | 2.98e-01 | 99.0% | 39.4% |
| 4028490 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.34e-01 | 100.0% | 32.8% |
| 5047436 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.55 | 43.0 | 4.16e-01 | 93.3% | 74.2% |
| 4522145 | 5050.1.1.54 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp | 0.54 | 38.0 | 3.26e-01 | 72.4% | 98.9% |
| 3718148 | 2484.8.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) | 0.54 | 46.0 | 3.32e-01 | 92.4% | 35.3% |
| 3468214 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 35.0 | 2.88e-01 | 100.0% | 35.5% |
| 3876677 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 44.0 | 3.80e-01 | 93.3% | 55.9% |
| 3941457 | 1203.1.2.3 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB | 0.53 | 37.0 | 3.62e-01 | 85.7% | 64.2% |
| 3482000 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.53 | 38.0 | 3.44e-01 | 81.0% | 55.2% |
| 4459295 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 46.0 | 3.56e-01 | 100.0% | 43.3% |
| 4242186 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.51 | 41.0 | 3.01e-01 | 96.2% | 32.7% |
| 3791628 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.51 | 40.0 | 3.63e-01 | 85.7% | 66.9% |
| 5028217 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 41.0 | 3.41e-01 | 88.6% | 72.6% |
D2
medium
residues 19-195
D3
medium
residues 389-476
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vwaA03 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.71 | 63.0 | 4.37e-01 | 100.0% | 32.9% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 62.0 | 5.37e-01 | 100.0% | 77.1% |
| 1elkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 61.0 | 5.11e-01 | 97.7% | 74.5% |
| 3lpzA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 61.0 | 4.27e-01 | 100.0% | 35.8% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.69 | 60.0 | 4.34e-01 | 100.0% | 39.0% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.68 | 51.0 | 4.70e-01 | 78.4% | 80.2% |
| 1udyA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.67 | 50.0 | 4.56e-01 | 79.5% | 76.7% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.65 | 57.0 | 4.82e-01 | 100.0% | 95.4% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 48.0 | 4.70e-01 | 78.4% | 89.6% |
| 3zheC01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 56.0 | 4.50e-01 | 100.0% | 60.3% |
| 4ffbC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 56.0 | 4.22e-01 | 100.0% | 44.2% |
| 2or0B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.62 | 52.0 | 4.70e-01 | 95.5% | 85.5% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.59 | 50.0 | 3.99e-01 | 97.7% | 54.4% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.59 | 44.0 | 3.48e-01 | 81.8% | 87.6% |
| 6wb9201 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 48.0 | 3.51e-01 | 100.0% | 32.9% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.55 | 43.0 | 4.48e-01 | 95.5% | 97.5% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 43.0 | 3.42e-01 | 86.4% | 64.7% |
| 4udsA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.60e-01 | 95.5% | 65.3% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.46e-01 | 92.0% | 67.0% |
| 6ok0B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 45.0 | 4.18e-01 | 100.0% | 75.6% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 42.0 | 3.22e-01 | 88.6% | 60.8% |
| 5d1rB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.30e-01 | 97.7% | 82.3% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.51 | 43.0 | 3.21e-01 | 100.0% | 36.4% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.50 | 43.0 | 3.80e-01 | 100.0% | 90.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3795798 | 109.4.1.884 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_UBP24_USP9X-Y | 0.69 | 60.0 | 4.67e-01 | 100.0% | 53.5% |
| 3512421 | 109.4.1.871 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4 | 0.67 | 58.0 | 5.28e-01 | 100.0% | 73.6% |
| 3679473 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.65 | 57.0 | 4.95e-01 | 100.0% | 70.0% |
| 3695193 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 4.12e-01 | 100.0% | 38.1% |
| 3606213 | 109.4.1.21 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH | 0.64 | 56.0 | 4.70e-01 | 98.9% | 90.3% |
| 3539086 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.64 | 56.0 | 5.16e-01 | 98.9% | 99.1% |
| 3275510 | 109.4.1.271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR | 0.63 | 54.0 | 4.45e-01 | 100.0% | 66.5% |
| 3272621 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 53.0 | 3.78e-01 | 100.0% | 34.9% |
| 4954061 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.61 | 53.0 | 3.58e-01 | 95.5% | 45.5% |
| 4969907 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.60 | 52.0 | 4.34e-01 | 100.0% | 84.2% |
| 3168625 | 5.1.4.476 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_C | 0.59 | 51.0 | 3.90e-01 | 100.0% | 54.2% |
| 3457650 | 185.1.1.2 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 | 0.58 | 44.0 | 4.45e-01 | 83.0% | 96.7% |
| 4160539 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 48.0 | 3.21e-01 | 90.9% | 70.4% |
| 3813504 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 4.43e-01 | 92.0% | 85.3% |
| 4027936 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.51 | 40.0 | 3.20e-01 | 88.6% | 61.5% |