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hypothetical_protein_pqer_cds_1009

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1009__YP_009483700__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483700 ↗
Protein ID:
hypothetical_protein_pqer_cds_1009
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (72 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 141-204_241-294
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1162__YP_008438512__Pandoravirus_salinus__1349410__D185-233_266-310
D2 medium residues 53-66_113-124_205-240
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 50.0 3.12e-01 79.0% 27.7%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 45.0 3.40e-01 77.4% 79.4%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 44.0 3.60e-01 74.2% 55.3%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.62 49.0 3.62e-01 85.5% 88.4%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 4.18e-01 87.1% 84.7%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.60 42.0 4.21e-01 72.6% 82.8%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 45.0 4.55e-01 82.3% 98.4%
1d0cA03 3.90.1230.10 Alpha Beta › Alpha-Beta Complex › Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 › Nitric Oxide Synthase; Chain A, domain 3 0.59 44.0 3.88e-01 79.0% 86.5%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.58 42.0 3.48e-01 75.8% 65.7%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.58 43.0 3.93e-01 80.6% 89.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.57 46.0 4.23e-01 87.1% 96.2%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 43.0 3.41e-01 87.1% 55.3%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 46.0 3.89e-01 90.3% 77.0%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 43.0 3.37e-01 85.5% 65.4%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 37.0 3.65e-01 72.6% 69.1%
4py6C00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 46.0 3.67e-01 95.2% 78.7%
2kmgA00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.54 42.0 3.28e-01 87.1% 73.9%
2jaqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.04e-01 87.1% 83.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 41.0 3.51e-01 85.5% 88.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4365764 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.66 48.0 4.17e-01 75.8% 72.2%
3221606 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 43.0 3.59e-01 80.6% 97.1%
4446039 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 41.0 4.00e-01 77.4% 81.4%
3564576 106.1.1.8 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.56 43.0 3.30e-01 83.9% 78.7%
3696367 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 41.0 3.89e-01 79.0% 90.7%
5048452 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.55 41.0 3.85e-01 79.0% 68.0%
4961793 101.1.2.929 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_2833_C 0.51 41.0 2.74e-01 96.8% 26.6%
5082565 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.50 42.0 4.00e-01 91.9% 77.1%
D3 medium residues 67-112_125-139
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 44.0 3.41e-01 75.4% 100.0%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.79e-01 83.6% 89.7%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 47.0 4.01e-01 86.9% 68.3%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 43.0 3.85e-01 75.4% 91.7%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.59 45.0 3.93e-01 90.2% 94.4%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.67e-01 85.2% 87.5%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 46.0 3.59e-01 90.2% 100.0%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.76e-01 100.0% 82.5%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.80e-01 88.5% 92.7%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 44.0 3.46e-01 90.2% 42.6%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 48.0 4.08e-01 100.0% 99.0%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.54 42.0 3.85e-01 83.6% 93.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 41.0 3.06e-01 90.2% 44.3%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.47e-01 90.2% 77.8%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.53 40.0 3.98e-01 90.2% 94.2%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.52 38.0 3.16e-01 78.7% 45.1%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.37e-01 93.4% 66.4%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 40.0 3.27e-01 90.2% 51.1%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.80e-01 98.4% 92.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.43e-01 88.5% 83.0%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 40.0 3.04e-01 90.2% 42.9%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.50 39.0 3.38e-01 86.9% 82.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945059 9.1.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.61 47.0 4.03e-01 86.9% 95.2%
1560911 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 50.0 3.91e-01 93.4% 85.0%
3936802 10.1.1.90 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.59 50.0 3.87e-01 100.0% 66.7%
4103373 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.59 44.0 4.61e-01 83.6% 100.0%
3997946 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.58 42.0 3.03e-01 77.0% 58.9%
5039071 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.58 41.0 3.70e-01 75.4% 68.2%
2898302 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.57 44.0 3.51e-01 90.2% 95.9%
3498805 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.56 39.0 2.98e-01 75.4% 30.3%
3997447 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.55 43.0 2.88e-01 93.4% 33.2%
3865191 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.53 42.0 3.58e-01 91.8% 75.5%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.53 40.0 3.38e-01 86.9% 93.0%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.91e-01 86.9% 96.7%