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hypothetical_protein_pqer_cds_1021

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1021__YP_009483712__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483712 ↗
Protein ID:
hypothetical_protein_pqer_cds_1021
Kingdom:
euk

Quality

53.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
D2 high residues 213-309
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D89-187
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 40.0 4.31e-01 75.3% 74.1%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.58 47.0 4.39e-01 96.9% 72.5%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 41.0 2.85e-01 75.3% 86.4%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.57 33.0 3.41e-01 74.2% 60.0%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 41.0 3.05e-01 77.3% 83.9%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.56 35.0 3.94e-01 99.0% 87.0%
2kwaA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 43.0 4.27e-01 81.4% 86.1%
2zycA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 43.0 4.20e-01 96.9% 77.4%
3tjtA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.54 32.0 3.56e-01 90.7% 77.5%
1o7fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.48e-01 81.4% 89.7%
3zevB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.98e-01 85.6% 77.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 36.0 3.33e-01 73.2% 65.4%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 30.0 3.51e-01 76.3% 84.1%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 43.0 3.89e-01 95.9% 75.4%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.50 39.0 4.12e-01 100.0% 100.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.61 45.0 4.47e-01 82.5% 75.0%
3952367 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.55 46.0 3.60e-01 96.9% 41.4%
5019589 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.52e-01 74.2% 87.4%
5045662 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.55 44.0 3.51e-01 92.8% 40.5%
4201292 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 40.0 2.88e-01 80.4% 81.0%
3287283 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 4.02e-01 97.9% 76.4%
3584690 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 36.0 2.76e-01 72.2% 76.3%
4998602 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.48e-01 94.8% 54.1%
5004231 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.51 34.0 3.49e-01 80.4% 68.4%
3281932 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.51 41.0 3.68e-01 89.7% 64.8%
5014787 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.57e-01 84.5% 76.5%
3794202 304.20.1.3 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 0.51 39.0 3.66e-01 81.4% 96.7%
3972579 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.51 43.0 3.44e-01 95.9% 59.0%
3550428 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 36.0 2.64e-01 76.3% 76.0%
3633420 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 43.0 3.41e-01 96.9% 66.4%
4998663 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.49e-01 91.8% 60.0%
4962040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.50e-01 84.5% 72.1%
5045862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 3.85e-01 93.8% 80.0%
D3 medium residues 519-627_663-732
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_69__YP_009429953__Pandoravirus_salinus__1349410__D457-567_599-657