←Back to structures
hypothetical_protein_pqer_cds_1036
Euk-VirPandoravirus_quercus
hypothetical_protein_pqer_cds_1036__YP_009483727__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483727 ↗
- Protein ID:
- hypothetical_protein_pqer_cds_1036
- Kingdom:
- euk
Quality
75.0
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-203
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 40.0 | 3.55e-01 | 80.2% | 90.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059281 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.51 | 36.0 | 3.20e-01 | 71.8% | 87.1% |
| 3720586 | 109.4.1.313 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N | 0.50 | 39.0 | 2.55e-01 | 81.4% | 32.7% |
| 3978499 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.50 | 40.0 | 4.01e-01 | 83.1% | 88.9% |
D2
medium
residues 204-341
Domain cluster:
rep: hypothetical_protein_pdul_cds_487__YP_008319237__Pandoravirus_dulcis__1349409__D148-213_248-318
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 28.0 | 3.33e-01 | 87.0% | 61.5% |
| 2hh2A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 24.0 | 3.07e-01 | 86.2% | 73.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077739 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.56 | 26.0 | 3.27e-01 | 88.4% | 71.2% |
| 5057183 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 27.0 | 3.10e-01 | 88.4% | 62.1% |
| 3961915 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.55 | 41.0 | 3.04e-01 | 77.5% | 83.8% |
| 4246133 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 31.0 | 3.67e-01 | 80.4% | 80.0% |
| 4944569 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.54 | 31.0 | 3.07e-01 | 85.5% | 50.0% |
| 4999750 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.54 | 25.0 | 2.94e-01 | 88.4% | 58.5% |
| 4043865 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.54 | 25.0 | 2.99e-01 | 84.8% | 62.4% |
| 5045098 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 27.0 | 3.26e-01 | 83.3% | 72.2% |
| 5045726 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.53 | 25.0 | 3.11e-01 | 88.4% | 71.2% |
| 4234519 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.52 | 40.0 | 2.79e-01 | 79.7% | 68.2% |
| 3727442 | 101.1.2.569 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28722 | 0.51 | 28.0 | 2.95e-01 | 82.6% | 55.2% |
| 5058931 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 28.0 | 3.17e-01 | 89.1% | 70.0% |
| 5046671 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 30.0 | 2.95e-01 | 88.4% | 50.3% |
| 3037399 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.50 | 24.0 | 2.96e-01 | 87.0% | 69.0% |