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hypothetical_protein_pqer_cds_1048

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1048__YP_009483739__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483739 ↗
Protein ID:
hypothetical_protein_pqer_cds_1048
Kingdom:
euk

Quality

82.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-95
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_122__YP_009481732__Pandoravirus_neocaledonia__2107708__D145-256
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.76 46.0 3.93e-01 84.6% 38.4%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.74 44.0 4.55e-01 81.3% 62.1%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.71 48.0 4.06e-01 85.7% 42.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.70 52.0 4.47e-01 100.0% 49.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.70 52.0 4.45e-01 100.0% 47.7%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.66 57.0 4.70e-01 100.0% 83.1%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 58.0 5.01e-01 100.0% 64.8%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 59.0 4.72e-01 100.0% 54.6%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 42.0 3.63e-01 81.3% 44.4%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.64 57.0 4.67e-01 100.0% 72.5%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.64 58.0 4.93e-01 100.0% 65.3%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 42.0 3.87e-01 80.2% 50.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.63 57.0 4.56e-01 100.0% 81.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.63 54.0 4.81e-01 98.9% 81.8%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 46.0 3.67e-01 90.1% 38.3%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.62 52.0 4.65e-01 93.4% 80.3%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.62 55.0 4.65e-01 100.0% 67.7%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.59e-01 70.3% 47.3%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.61 55.0 4.24e-01 100.0% 74.9%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 38.0 3.36e-01 78.0% 44.0%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 46.0 4.17e-01 87.9% 67.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.57 44.0 4.05e-01 86.8% 61.5%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.56 46.0 3.72e-01 94.5% 72.0%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 42.0 3.92e-01 83.5% 88.1%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 2.99e-01 87.9% 66.4%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.36e-01 86.8% 47.9%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 48.0 3.34e-01 97.8% 44.9%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.01e-01 100.0% 33.1%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.53 42.0 3.67e-01 85.7% 60.0%
7rlrA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.48e-01 100.0% 85.2%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 42.0 3.68e-01 87.9% 88.2%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 42.0 3.81e-01 94.5% 62.5%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.55e-01 87.9% 77.3%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.90e-01 100.0% 92.6%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.52 45.0 4.04e-01 100.0% 80.5%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.53e-01 93.4% 74.1%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.35e-01 73.6% 80.4%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 39.0 4.06e-01 82.4% 100.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940463 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 62.0 5.37e-01 100.0% 63.7%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.68 54.0 5.04e-01 100.0% 69.1%
4980169 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.67 51.0 3.45e-01 90.1% 21.8%
3701390 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.67 60.0 4.41e-01 100.0% 47.8%
3360262 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 60.0 4.68e-01 100.0% 48.9%
3734385 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.66 50.0 3.21e-01 80.2% 24.5%
4403206 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.65 55.0 4.57e-01 96.7% 53.5%
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.65 58.0 4.79e-01 100.0% 57.0%
3534691 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.65 59.0 4.79e-01 100.0% 55.2%
376518 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.65 42.0 3.63e-01 81.3% 44.4%
3286883 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.64 44.0 3.22e-01 80.2% 26.5%
3515197 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.64 57.0 4.69e-01 100.0% 54.7%
4025861 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.64 57.0 4.65e-01 100.0% 62.9%
3270312 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.63 57.0 4.61e-01 100.0% 54.9%
3786831 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.63 48.0 3.16e-01 84.6% 23.9%
3701124 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.62 56.0 4.42e-01 100.0% 80.5%
5047908 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.62 46.0 3.24e-01 89.0% 22.4%
3388283 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.62 54.0 4.62e-01 100.0% 87.1%
3056279 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.62 55.0 4.58e-01 100.0% 57.7%
3651800 71.1.1.12 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.62 50.0 4.22e-01 85.7% 53.8%
4992680 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.61 48.0 3.28e-01 89.0% 23.0%
4668983 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.61 54.0 4.55e-01 100.0% 64.4%
2712795 7503.1.1.20 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF7499 0.61 52.0 4.35e-01 100.0% 89.0%
5055269 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 54.0 4.82e-01 100.0% 82.3%
3269932 5.1.5.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.59 53.0 3.31e-01 97.8% 20.6%
5037445 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 46.0 3.32e-01 84.6% 39.2%
3633470 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.58 51.0 4.62e-01 100.0% 76.7%
4953123 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 40.0 2.65e-01 71.4% 89.5%
4974362 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 46.0 3.35e-01 84.6% 39.9%
None — 0.58 49.0 2.89e-01 93.4% 12.6%
3583345 5.1.4.288 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.58 51.0 3.23e-01 95.6% 22.7%
3936609 5.1.3.176 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.57 51.0 3.24e-01 95.6% 22.4%
3769924 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.57 45.0 3.98e-01 97.8% 58.5%
2466103 265.1.1.2 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.57 46.0 4.08e-01 87.9% 67.2%
3706524 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.57 51.0 3.56e-01 100.0% 40.7%
3491456 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.56 47.0 4.00e-01 91.2% 57.3%
5013876 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 45.0 3.24e-01 84.6% 37.8%
3170704 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.22e-01 97.8% 22.4%
4955361 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 43.0 3.17e-01 84.6% 38.8%
9395 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.56 41.0 3.05e-01 79.1% 36.9%
3484305 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.56 37.0 4.21e-01 70.3% 96.9%
5083094 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 43.0 3.17e-01 84.6% 39.2%
3595344 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 45.0 2.93e-01 86.8% 62.6%
3587919 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.55 45.0 2.99e-01 87.9% 65.2%
3496336 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.94e-01 94.5% 24.5%
3193239 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.53 48.0 3.06e-01 100.0% 28.2%
2582184 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.53 45.0 3.19e-01 92.3% 78.7%
5027751 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.52 43.0 3.74e-01 94.5% 96.7%