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hypothetical_protein_pqer_cds_109

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_109__YP_009482800__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482800 ↗
Protein ID:
hypothetical_protein_pqer_cds_109
Kingdom:
euk

Quality

60.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 159-263
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_687__YP_008437699__Pandoravirus_salinus__1349410__D149-250
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qfvC02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.79 47.0 6.00e-01 74.3% 96.9%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.75 47.0 4.95e-01 79.0% 69.1%
1pjuA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.65 30.0 3.74e-01 81.0% 71.4%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 47.0 3.58e-01 99.0% 38.9%
3ehrA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.57 46.0 4.43e-01 99.0% 75.9%
7xceA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 48.0 3.52e-01 100.0% 37.7%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.54 45.0 4.64e-01 95.2% 97.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645193 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.84 47.0 5.54e-01 71.4% 78.7%
3878041 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.77 46.0 4.84e-01 98.1% 66.3%
5004518 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.60 41.0 4.73e-01 70.5% 98.7%
3727990 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 47.0 3.54e-01 100.0% 38.5%
3462930 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.56 46.0 4.16e-01 100.0% 64.3%
4827891 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.56 48.0 3.80e-01 100.0% 48.4%
3255371 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.54 46.0 3.70e-01 98.1% 50.0%
3928045 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.51 48.0 4.01e-01 100.0% 70.0%
3169410 109.4.1.819 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec8_C 0.50 41.0 2.54e-01 92.4% 36.3%
5047383 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.50 42.0 3.02e-01 94.3% 71.0%
D2 medium residues 592-658
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v38A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 43.0 2.84e-01 86.6% 52.3%
1zavA01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.56 42.0 3.49e-01 86.6% 87.4%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 3.18e-01 70.1% 93.9%
5o60I00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.52 39.0 3.36e-01 88.1% 88.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060130 3268.1.1.1 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.62 42.0 3.62e-01 71.6% 96.4%
5060684 3268.1.1.1 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.58 40.0 3.45e-01 71.6% 95.5%
3477921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 39.0 3.04e-01 73.1% 48.4%
3228680 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.57 40.0 2.98e-01 74.6% 51.4%
3861586 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 37.0 2.51e-01 71.6% 63.1%
3285320 304.5.1.2 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 0.53 36.0 3.12e-01 70.1% 93.6%
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.51 39.0 2.57e-01 85.1% 77.6%
D3 medium residues 659-787
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_164__YP_008318757__Pandoravirus_dulcis__1349409__D571-718