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hypothetical_protein_pqer_cds_1120

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1120__YP_009483811__Pandoravirus_quercus__2107709

Identity

Accession:: YP_009483811 ↗
Protein ID:: hypothetical_protein_pqer_cds_1120
Kingdom:: euk

Quality

75.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-67

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19083.6 best	DUF5774	50.3	3.60e-13	96.7%	38.2%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.79	54.0	5.18e-01	71.7%	64.7%
5dn6J00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.78	54.0	5.00e-01	71.7%	63.5%
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.75	51.0	4.57e-01	71.7%	55.3%
3vz3A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.69	55.0	3.64e-01	90.0%	78.3%
4gczA03	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.62	42.0	4.11e-01	70.0%	80.0%
2zt5A02	3.30.40.230	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 ›	0.61	43.0	3.89e-01	75.0%	66.7%
2ocgA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.60	41.0	2.74e-01	71.7%	19.3%
3jruA01	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.57	41.0	3.08e-01	93.3%	29.4%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	44.0	3.43e-01	90.0%	89.1%
3kr9A02	1.10.287.1890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	41.0	4.16e-01	95.0%	83.6%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.53	42.0	3.54e-01	88.3%	59.2%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.52	41.0	4.16e-01	96.7%	88.5%
4gytA00	1.20.120.740	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695	0.52	43.0	3.15e-01	96.7%	79.1%
2ohfA03	1.10.150.300	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain	0.51	36.0	3.48e-01	81.7%	68.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4940186	2004.1.1.76 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87	0.67	49.0	3.02e-01	78.3%	21.9%
5082199	4982.1.1.9 ↗	alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › DUF898	0.63	47.0	4.35e-01	81.7%	66.3%
4938700	101.1.2.940 ↗	alpha arrays › HTH › HTH › winged helix domain › PF26383	0.62	46.0	3.21e-01	83.3%	28.2%
3580312	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.60	42.0	3.75e-01	76.7%	78.9%
5008096	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	46.0	3.25e-01	88.3%	63.3%
4009623	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.59	41.0	4.02e-01	73.3%	93.8%
3484174	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.59	39.0	2.89e-01	70.0%	26.7%
3959306	150.8.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE	0.59	42.0	3.31e-01	78.3%	97.2%
4308339	150.1.2.20 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Rubrerythrin	0.58	48.0	3.07e-01	98.3%	32.0%
3408361	632.23.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I › DUF4485	0.57	40.0	3.63e-01	73.3%	60.0%
3409013	148.1.3.40 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid	0.57	40.0	3.16e-01	75.0%	48.9%
3258522	601.48.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain	0.57	45.0	4.40e-01	93.3%	81.5%
3535235	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.56	45.0	3.13e-01	90.0%	68.6%
4066776	138.1.1.0 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain	0.54	43.0	3.60e-01	91.7%	72.2%

D2 medium residues 68-155

PDB

Domain cluster: rep: hypothetical_protein_psal_cds_1274__YP_008438707__Pandoravirus_salinus__1349410__D78-155

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19083.6 best	DUF5774	68.4	8.80e-19	97.7%	60.2%