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hypothetical_protein_pqer_cds_1121

Euk-Vir

Pandoravirus_quercus

hypothetical_protein_pqer_cds_1121__YP_009483812__Pandoravirus_quercus__2107709

Identity

Accession:: YP_009483812 ↗
Protein ID:: hypothetical_protein_pqer_cds_1121
Kingdom:: euk

Quality

73.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-125

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

D2 medium residues 126-193_207-269

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp0083__YP_009119052__Pandoravirus_inopinatum__1605721__D104-171_185-245

D3 medium residues 270-301_329-378

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jxtA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.67	59.0	5.10e-01	100.0%	73.8%
3a7mA01	1.20.58.380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit.	0.63	44.0	3.96e-01	72.0%	70.9%
1werA01	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.60	42.0	3.29e-01	72.0%	73.9%
5mi7A03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.59	48.0	3.41e-01	90.2%	74.2%
7nc3F01	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.59	45.0	4.16e-01	85.4%	82.5%
2z0qA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.59	45.0	3.52e-01	85.4%	78.8%
3lbxB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	41.0	3.80e-01	75.6%	82.2%
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.56	40.0	3.91e-01	74.4%	73.0%
1h7cA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	37.0	3.52e-01	70.7%	96.1%
3hn2A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.54	40.0	3.50e-01	80.5%	93.0%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	42.0	3.51e-01	89.0%	57.0%
2chnB03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.52	41.0	3.27e-01	87.8%	68.3%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.52	39.0	3.68e-01	81.7%	85.3%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.51	38.0	3.52e-01	84.1%	84.2%
2y51A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	43.0	2.99e-01	100.0%	76.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3741970	101.33.1.0 ↗	alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain	0.65	56.0	5.23e-01	97.6%	86.7%
3823524	109.4.1.1257 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2	0.64	57.0	4.94e-01	100.0%	67.2%
4954427	1075.5.1.8 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3	0.63	44.0	3.09e-01	73.2%	55.8%
3678886	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.60	51.0	3.34e-01	98.8%	20.9%
3469222	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.59	52.0	4.45e-01	100.0%	80.0%
5000809	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.59	46.0	4.13e-01	85.4%	86.1%
3408110	604.13.1.1 ↗	alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like › USP8_dimer	0.58	48.0	4.39e-01	92.7%	75.5%
4980099	210.1.2.1 ↗	a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase	0.56	44.0	3.74e-01	87.8%	70.3%
5070335	1075.5.1.8 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3	0.54	42.0	3.02e-01	85.4%	60.7%
4940089	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.53	32.0	2.93e-01	82.9%	44.5%
3491731	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.52	36.0	3.12e-01	72.0%	47.4%
3412554	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.51	34.0	3.07e-01	70.7%	82.4%
5050181	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.50	35.0	2.88e-01	75.6%	35.9%

D4 medium residues 494-585

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zkrB00	1.20.920.50	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.52	44.0	3.81e-01	92.4%	84.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3684428	109.4.1.1258 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2	0.58	46.0	2.98e-01	89.1%	18.4%
3472779	109.3.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2	0.52	32.0	2.14e-01	96.7%	14.3%

D5 medium residues 586-655

PDB