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hypothetical_protein_pqer_cds_1140
Euk-VirPandoravirus_quercus
hypothetical_protein_pqer_cds_1140__YP_009483831__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483831 ↗
- Protein ID:
- hypothetical_protein_pqer_cds_1140
- Kingdom:
- euk
Quality
65.5
mean pLDDT
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-87_103-184
Domain cluster:
rep: hypothetical_protein_pdul_cds_1023__YP_008319963__Pandoravirus_dulcis__1349409__D15-94_109-159
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i6yA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.61 | 45.0 | 4.91e-01 | 77.4% | 100.0% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.60 | 43.0 | 4.59e-01 | 100.0% | 84.7% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 38.0 | 4.34e-01 | 100.0% | 90.5% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 32.0 | 3.88e-01 | 76.7% | 95.2% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.53 | 43.0 | 4.04e-01 | 100.0% | 71.0% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.52 | 47.0 | 4.28e-01 | 100.0% | 74.4% |
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 33.0 | 3.83e-01 | 70.7% | 93.3% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.52 | 46.0 | 4.30e-01 | 100.0% | 82.1% |
| 6wl5A01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 44.0 | 4.25e-01 | 100.0% | 83.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3334690 | 886.1.1.1 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › SOUL | 0.56 | 50.0 | 4.48e-01 | 100.0% | 75.3% |
| 4797685 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.55 | 38.0 | 4.11e-01 | 88.0% | 85.0% |
| 3598810 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.53 | 45.0 | 4.08e-01 | 100.0% | 67.8% |
| 3484028 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.53 | 48.0 | 4.44e-01 | 100.0% | 90.2% |
| 2834623 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.52 | 46.0 | 4.25e-01 | 100.0% | 90.8% |
| 3510388 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 35.0 | 3.65e-01 | 100.0% | 75.6% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.51 | 46.0 | 3.98e-01 | 100.0% | 79.0% |
| 3381094 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.50 | 45.0 | 3.52e-01 | 100.0% | 71.7% |
| 4604105 | 11.1.1.125 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CD4-extracel | 0.50 | 30.0 | 3.03e-01 | 72.2% | 56.3% |
| 5009993 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 45.0 | 4.05e-01 | 100.0% | 98.9% |
D2
high
residues 452-513
D3
medium
residues 186-290